Vibrio sp. HB236076: AB0763_11290
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Entry
AB0763_11290 CDS
T10847
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vih Vibrio sp. HB236076
Pathway
vih05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
AB0763_11290 (rpoS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vih03021
]
AB0763_11290 (rpoS)
Transcription machinery [BR:
vih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AB0763_11290 (rpoS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Fe_dep_repress
7TMR-DISMED2
DUF4859
Motif
Other DBs
NCBI-ProteinID:
XDK24762
UniProt:
A0AB39H9Z2
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All DBs
Position
1:complement(2575506..2576498)
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AA seq
330 aa
AA seq
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MTTNNTLLKSDDLDFENNMDMVSTSRFDIDNTDKTTKADIEEVEVTSKIMDATHLYLGEI
GFSPLLTAQEEVFYARRSLRGDKVARQRMIESNLRLVVKISRRYINRGLALLDLIEEGNL
GLIRAVEKFDPEKGFRFSTYATWWIRQTIERALMNQTRTIRLPIHIVKELNIYLRTAREL
SQKLEHEPTPEEIAQQLDISVAEVTKMMRLNERVTSVDIYISNGDGNEKALLDVIPDDHN
SDPEVTTQDDNMSQVLTVWLDKLSDKQKDVLARRFGLFGYEPATLEEVGREIGLTRERVR
QIQVEGLRRLREILIAEGLDIESLFDFHQE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaataatacattattaaaaagcgacgatttggattttgaaaacaatatggac
atggtttcaacatcccgttttgatattgacaatacagacaaaacaaccaaagccgatatt
gaagaggtggaagtcacctcgaagataatggatgccacgcatttgtacctcggtgaaatc
ggtttttcacccttattgactgctcaagaagaggttttttatgcacgacggtcattgaga
ggtgataaagttgcccgtcagcgaatgatagagagcaacttgcgtttggtggttaaaatt
tctcgccgctacattaaccgaggcttagcgcttttagatttaattgaagaaggcaacctg
gggttaatccgcgcggttgaaaagttcgatcctgaaaaagggtttcgtttttcaacctac
gcaacatggtggattcgtcaaacgatagaacgcgctctaatgaatcagactcgtactatc
cgtttgcctatccacattgtcaaagagttgaacatttacttgagaaccgctcgtgagttg
tctcaaaagcttgagcatgagccaacaccagaagagattgctcaacaactcgacatttca
gtggccgaagtcaccaaaatgatgcgtctaaatgaaagggtaacatcggtcgatatttac
atcagtaatggcgatggtaatgaaaaagcgttacttgatgttatacccgatgatcataac
tcagatcctgaggtgaccacccaagatgacaatatgagccaagtgttgaccgtttggctc
gataaactcagcgacaagcaaaaagacgtattagcgagacgctttgggttgtttggctat
gaaccagcgactcttgaagaagttggccgagaaattggcttaacgcgtgaaagagtgagg
cagatacaagttgaaggtctacgcaggctaagagaaatattgattgccgaaggtctagat
atcgaaagcttgtttgatttccaccaagagtaa
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