Vibrio sp. HB236076: AB0763_15675
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Entry
AB0763_15675 CDS
T10847
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vih Vibrio sp. HB236076
Pathway
vih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB0763_15675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vih03019
]
AB0763_15675
03009 Ribosome biogenesis [BR:
vih03009
]
AB0763_15675
Enzymes [BR:
vih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB0763_15675
Messenger RNA biogenesis [BR:
vih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB0763_15675
Ribosome biogenesis [BR:
vih03009
]
Prokaryotic type
rRNA helicases
AB0763_15675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XDK26480
UniProt:
A0AB39HIR5
LinkDB
All DBs
Position
2:535147..537000
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AA seq
617 aa
AA seq
DB search
MQDSVIQFNELDLNNDILSALDAMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKIDLSQHKPQAIVMAPTRELAIQVAAEVKNLGKNIRGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLISRDRLQLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPET
AQRVLFSATMPPMVKTIVERFLRDPAKIDVAGQNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI
ERVTKSSMEEIQLPHRDKVAEARLAQLGETLALEKEHKSLDKFTDLVNQLQSSLEIDANT
LAAMLLKRQQGKRPLFYVGEDPMIEAIERDKQRRKERRENGPRSNTNPQDWDTYQLQVGR
EQGVQVKDIVGALANELGLGKGSIGAIKLNPEHTFVQLPKSLSSQAATRLSKLKIRQKDV
GAVVCDFNDFREPRGRRDNNGGGRRDGGRRDGGGYRGQRDGGARRDGERRFDRNRGGDNR
GNFRGERGHSRRRPADA
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgtcattcaattcaatgaattagacttaaacaacgacattctttcagct
cttgatgcgatgggctttgtctcaccaacgccaattcaagccgctgccattccttttctt
ttagaaggtcgtgacgcattaggtaaagcgcaaaccggtacaggtaaaactgccgcgttc
tctttgccattactcaacaaaatcgatttatctcaacacaaaccacaagccattgtgatg
gcaccgactcgcgaattagctattcaggtggctgctgaagttaaaaaccttggcaaaaac
atccgcggtcttaaagtccttgagatctacggtggtgcttctatcgtcgatcaaatgcgc
gcactaaaatctggtgcacacattgttgttggtaccccaggtcgtgtaaaagatttgatc
tctcgcgatcgtcttcaacttgacgagtgtcatactttcgttcttgatgaagccgacgaa
atgctcaaaatgggcttcgttgatgacgtgacttggatcatggaacaagcaccagaaacc
gcgcagcgcgtgttgttctcagctaccatgcctccaatggtgaaaaccattgttgagcgc
tttttgcgtgacccggcaaaaattgacgttgctggccaaaaccacacggttgataaagta
gagcagcagttctgggtagtaaaaggcgtcgagaaagacgaggcgatgtctcgtttactt
gaaaccgaagagaccgatgcgtctatcgtcttcgttcgtactcgtcaagatactgagcgt
ttggcggactggttgtgtgctcgtggctttaaagcgtcggcactgcacggtgatattcct
caatcgttgcgtgagcgcaccgttgatcatatcaaacaaggcgtgattgatatcttggtt
gcgaccgacgttgtggcgcgtggtcttgatgtgccacgtattacccacgtctttaactac
gatattcctttcgatgttgagtcttacattcaccgtatcggtcgtactggtcgtgcggga
cgtaaaggtaaagcgattcttcttgttcgcaccaaccaattgcgtatgctaagaaccatc
gagcgcgtgactaagtcgtcaatggaagaaattcaattgccgcaccgtgataaagttgct
gaagcgcgtcttgcacaacttggtgaaacactggctctagaaaaagagcacaagtcttta
gacaagttcaccgatttggttaaccagttgcaatcgtctttagagatcgatgctaatacg
cttgcggctatgctgcttaagcgtcagcaaggtaagcgtccgttgttctacgtgggtgaa
gacccaatgatcgaagctatcgagcgcgataagcaacgtcgtaaagagcgtcgtgaaaac
ggtcctcgtagcaacacgaacccacaagattgggatacttaccagttgcaagttggtcgt
gagcaaggtgttcaggttaaagacattgttggtgcactggctaacgaacttggccttggt
aaagggtcaatcggtgcgattaaacttaaccctgagcacacgtttgttcagttgccgaag
agcctgagctcgcaagcggcgacgcgtttgagcaagcttaagatccgtcaaaaagacgtt
ggcgcggttgtgtgtgacttcaatgatttccgtgagccacgtggtcgccgcgataacaac
ggtggtggtcgtcgtgatggcggtcgtcgtgacggtggcggttaccgcggccagcgcgat
ggcggagctcgtcgcgatggtgagcgtcgttttgaccgcaaccgcggtggtgacaatcgc
ggtaatttccgcggagagcgtggtcattcacgtcgtcgccctgctgacgcttaa
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