Vibrio sp. HB236076: AB0763_15815
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Entry
AB0763_15815 CDS
T10847
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vih Vibrio sp. HB236076
Pathway
vih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB0763_15815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vih03019
]
AB0763_15815
Enzymes [BR:
vih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB0763_15815
Messenger RNA biogenesis [BR:
vih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB0763_15815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
P-loop_SecA
HI1480
UvrD-helicase
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
XDK26508
UniProt:
A0AB39HJB9
LinkDB
All DBs
Position
2:566767..568176
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AA seq
469 aa
AA seq
DB search
MSFNTLGLSQPILRAIDEKGYSTPSPIQQQAIPAILSGKDVMAAAQTGTGKTAGFTLPIL
EKLSQGHKVKSNQVRTLILTPTRELAAQVYDNVVEYSKHVSLSSAVVFGGVKINPQMQRL
RKGADVLVATPGRLIDLYQQNAIRFDQLECLVLDEADRMLDMGFIRDIKKVLQWLPKKRQ
NLLFSATFSDEIRELAKGLVNQPVEISVTPANSTAVTIEQAVYPADVKKKAPMLAKLIVD
GNWQQVLVFTRTKRGANRLAAFLTEQQLAAAAIHGNKSQGARTKALAQFKSGELRVLVAT
DIAARGIDIPQLPQVVNFELPNVAEDYVHRIGRTGRAGEPGKAISLVCAQEADDLFGIER
LIQKVLPRLSLEGYAVTNVVPESKLDTRPIKPKKPKKPKKHHDNQARPGTDAKAPAKRRP
RPAGARSSGSARSGQGKPAEQGNGTDKPNQGQKRRRPQGEKRQFKPQNS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaacaccttaggcttatcacagcccattcttcgcgctattgatgagaaaggt
tactcaacaccatcgccgattcaacaacaagccatccccgcgattttatcgggcaaagat
gtgatggcggcggcgcaaaccggtactggtaaaaccgcgggctttacgctaccgatccta
gaaaaattgtcacagggtcacaaagtcaaaagcaaccaagtgcgaaccctgattttaacc
ccgacacgtgaactggcggcacaggtttatgacaacgtggtcgagtacagtaaacatgtg
tctttgagttctgcggttgtcttcggcggcgttaaaattaacccgcaaatgcagcgattg
cgcaaaggggcagacgtgttagtcgccaccccgggtcgtttaatcgatttgtatcagcaa
aacgccatccgatttgatcaactcgagtgtttagtgctcgatgaagccgaccgcatgctg
gatatgggctttatccgtgatatcaaaaaggtattgcaatggctgccgaaaaagcgtcag
aacctgcttttttctgcaactttttctgatgagattcgcgagttagccaaaggacttgtc
aatcagccagtcgaaatttcagtgacaccggctaattcaaccgcggtgacgattgagcag
gccgtttaccctgctgacgtcaaaaagaaagcgccgatgttggccaaattaattgttgat
ggcaactggcagcaagtattggtctttacccgtaccaagcgcggtgccaatcgccttgcc
gcgtttttaactgagcaacaattggccgccgccgccattcacggcaacaaaagccaaggg
gcaagaaccaaagcactcgcgcaatttaaatccggtgagttaagagtcttagtggcgacc
gacatagccgcgcgcggtattgatattccgcaattgcctcaagtggtgaactttgaattg
cccaatgtggccgaagattatgttcaccgcattggccgtacggggcgtgccggtgagccg
ggtaaagcgatttctttagtctgcgctcaagaagcggacgatttgtttggcatcgagcgc
ttgattcaaaaagtgttgccacgcctatctttagaagggtatgcggtgaccaatgtggta
cccgagtcaaagctagacacgcgcccgataaagccgaaaaaaccgaaaaaaccgaaaaag
catcacgataaccaagcgcgtccaggtacggatgccaaagcgccggccaaacgtcgccca
cgtcctgcaggggcgcgctcgtctggttcagcgcgttcgggccagggtaaacctgctgag
caaggcaatggtaccgacaaacccaatcaaggtcagaagcgccgtcgcccacaaggtgaa
aaacgtcaatttaagcctcaaaacagctaa
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