Vibrio sp. D3: ACHFJ9_01320
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Entry
ACHFJ9_01320 CDS
T11387
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vii Vibrio sp. D3
Pathway
vii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHFJ9_01320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vii03019
]
ACHFJ9_01320
Enzymes [BR:
vii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACHFJ9_01320
Messenger RNA biogenesis [BR:
vii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACHFJ9_01320
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NCBI-ProteinID:
XJJ24941
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Position
1:complement(297515..298774)
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AA seq
419 aa
AA seq
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MSVNFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLP
IIQTVQQKKLNGTPQALILVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKL
EEGADMLIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQ
ILLFSATFEKRIKTIAYKLMESPIEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS
RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIEN
LLDQRLPQEWLAGFEPSLIEEVEPEKNGSGRRRSRSSEKRKLKAKLAIHKNRGKSRNSR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttaattttgctgacttaggcattgaacaaaagctaatcgagacgctaagcaat
ctaaatatcgtgacgccaacaccagtgcaagaaaagtctattccacatgtccttgaagga
aagaacttacttgctgctgcacaaactggtacggggaaaacagctgcgtttggtttacct
attatacaaaccgttcagcaaaagaaactcaacggtacgcctcaagcattgattttggtt
ccaacacgcgagcttgcgcagcaggtatttgataatttgaatcagtactctgcacaaaca
gaacttcgcattgtgtgtgtttatggtggtacaagcattggcgtacaaaaaaggaagtta
gaagagggcgctgatatgttgattgcaacaccaggccgccttttggatcatctgtttaat
ggcaacgtaaacatctccaaaaccagtatgcttgttctagacgaagccgaccgtatgtta
gatatgggattctggcctgacttgcaacgcatcttccgacgtttacccgccgaaaaacag
atcctgttgttctctgcgacatttgaaaagcgaatcaagactattgcgtacaaactcatg
gaatcgccgattgaagttgaagtgtcaccagcaaacacgacggctgaaacggtaaaacag
atggtttatccggtagacaaaaagcgtaaacgtgaattattggcgtacttgattggctcg
cgaaattggcagcaagtgcttgtatttacaaaaactaagcaaggtagcgatgagctagca
aaagagcttaagttagatggcataaaagcggtttcaattaacggggataagtcacagggt
gcgcgtcaaagagcgttggatgagttcaaacaaggtaaggtgcgtgcgttgattgcgaca
gatgtagctgcacgaggactggatattcaagagttagagcaagtggtgaactttgatatg
ccatttaaagccgaagattatgtccaccgtataggccgtactggccgtgcaggaaagtca
ggtttagctgtctctctaatgagtcgggatgaagaatatttattgcatgctatcgagaat
ttgcttgatcaacgcctaccgcaagaatggttggcaggcttcgagccaagccttatagaa
gaagtcgagcctgagaaaaatggtagtggacgccgtcgaagccgttcatcagagaagcgt
aagctaaaagcaaaattagcgattcataagaaccgtggtaaatcacgtaactctcgctaa
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