Vibrio sp. D3: ACHFJ9_07865
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Entry
ACHFJ9_07865 CDS
T11387
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vii Vibrio sp. D3
Pathway
vii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHFJ9_07865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vii03019
]
ACHFJ9_07865
Enzymes [BR:
vii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACHFJ9_07865
Messenger RNA biogenesis [BR:
vii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACHFJ9_07865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XJJ24660
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All DBs
Position
1:1802624..1803874
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AA seq
416 aa
AA seq
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MTDKTQQATFADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTA
AFSLPILQKIVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVF
GGVSVNPQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEEL
NKILALLPEKKQTLLFSATFPDKVTTLAQHLLRDPVEVQLQSAEASTLVQRVFSVNKGEK
TAVLAHLIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK
SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD
DYHHFKVIEKKNKFQLEREQVEGFEVEDDQSEAYFLPMKPRAKPAGTGKKKKKRNQ
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaaacacagcaagcgacatttgccgatcttggcctgattccaaccttagtc
gagcgactagaagcgttagaatacagtcaaccgacgcccattcaatcccgttctattcct
gatatccttgaagggaaagatattattggtggtgccaatacggggtctggtaaaaccgct
gctttttcgctgccaatcttgcaaaaaattgttcagcaagacgaaacaaatcatcgccgt
ggtaacttcgtttctcacctgattttagtaccaactcgtgagttggcatcacaggtggca
tacaacgtcaaatcttactcataccatcttagagataagatcaaaacggttgccgtattt
ggtggtgtgtcggtgaacccacaaatgctggcgcttcgcggtggctgtgacattatcgta
gctacgccgggtcgattacttgatctggtatccagtaacgcgattaagttggaccaagta
aaaacgctcgtgctcgatgaagctgaccgtatgctgagcctcggatttaccgaagaactc
aataagattcttgcgttactgccagagaagaagcagacgctgctattttctgctactttc
cctgataaagtcacgacgctggctcagcacttgctccgcgaccctgttgaagttcagttg
cagagcgcagaagccagcactttggtgcaacgcgtgtttagtgtaaataaaggtgagaaa
acggcggtactcgcgcacttaatcaaacagcatcagtggcgacagactttgatttttgtg
aatgctaagaatgcctgtaaccatttagctcaaaaactgtcaaaacgcggtattactgct
gaagttttccatggtgataaagggcagggcgctcgtactcgtgtacttgacggttttaag
tctggcgagattcaagttcttattgccaccgatatcgcagcacgtggccttgatattgaa
aagctgccagtggtgattaacttcgatctcccgcgtagtcctgctgactatatgcatcga
atagggcgtagtggtcgtgctggtgaagtgggtctagggctatctcttatcgattacgat
gactatcaccatttcaaagtgatagaaaagaaaaataagttccaacttgaacgtgagcag
gtagagggctttgaagtggaagacgaccaaagtgaagcctactttttaccgatgaagccg
cgtgcaaaaccagcaggtacagggaaaaagaagaaaaagcgcaatcaatag
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