Vibrio sp. D3: ACHFJ9_19290
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Entry
ACHFJ9_19290 CDS
T11387
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vii Vibrio sp. D3
Pathway
vii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACHFJ9_19290 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vii03400
]
ACHFJ9_19290 (recD)
Enzymes [BR:
vii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACHFJ9_19290 (recD)
DNA repair and recombination proteins [BR:
vii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACHFJ9_19290 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
NAT10_TcmA_helicase
AAA_11
Viral_helicase1
SLFN-g3_helicase
UvrD-helicase
AAA_22
AAA_16
nSTAND3
UvrD_C
DEAD
CbiA
AAA_28
MukB
TrwB_AAD_bind
ResIII
YrbL-PhoP_reg
Herpes_Helicase
NTPase_1
T2SSE
AAA_7
DUF87
SRP54
RNA_helicase
AAA
Motif
Other DBs
NCBI-ProteinID:
XJJ26225
LinkDB
All DBs
Position
2:complement(2436898..2439045)
Genome browser
AA seq
715 aa
AA seq
DB search
MTTNHNLHSDQNSLLVVLERLAHKGAIRQLDYQFACFIDSQTHDEQSDSQALAFIAGVVS
SELGKGHICLSLFDAQGQSTDLASKLGLFGESALALNTQLQGIDWIEVLQNSSVVGAQGE
ALPLMFDGERLYLHRYWHYEVTLAEKLNQLGAVVNLQSQELARLSDLLNHLFARQYHFLF
NALGKAVEAGSSNQVLRQQLVCDHLDVVASESLDWHAIDSVLSNARKVQDLQILDELVPL
SACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNLTIKLVAPTG
KAAARLTESIGKAVQELPVSPELKAKIPTESSTLHRLLGAIPNSAEFRHNKQNPLHLDIL
VIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFHALGYGKEQA
SAIAKLTGFDTLVHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSGSAASVDNVW
ARDFSDIEHFALSSQHYNQMMQTLVQEYGRYLKRIGQQETDPETGEPESLTRKAKAVLDT
FNQCRLLCAIREGDFGVAGLNQRIEKALAARKFIQVQDEIWYHGRPVMVTRNDHGLGLYN
GDIGICMRDDSEDEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHKSQGSEFDYTLM
ILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTTRASGLVQQLTN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaaatcacaatcttcattctgaccaaaatagcctattggtagtgctagaacgc
ttggcgcacaaaggtgctattcgtcagctcgactatcaatttgcctgttttattgattct
caaacgcatgatgaacagtcggatagccaagcactggcgtttatcgcgggtgttgtcagt
agtgagcttggcaaaggacatatctgtctgtctctgttcgatgcgcaagggcaatctacg
gatttagccagtaagctagggctgtttggtgagtcggcattggcgctcaacacacagttg
caaggcatagactggattgaagtattacaaaattccagcgtggttggcgcgcaaggagaa
gccttgccgctgatgttcgatggtgagcgtctgtatctgcaccgctattggcattatgaa
gtgacactggcggaaaagctcaatcagttgggcgctgtagtgaacttgcagtcgcaagag
ttagcgcgattatcggacttgctcaaccatctgtttgcacgccaataccattttctgttt
aacgcgttaggcaaagcagtagaagcgggaagcagcaaccaagtgttgcgtcagcaattg
gtgtgtgaccaccttgatgtggtcgcaagcgaatcgttggattggcacgccattgattcc
gtgcttagcaatgcgcgcaaggttcaagatttgcaaatactggatgaactcgtaccactc
tcggcttgcgtgaactggcaaaaagtcgcggcggcagttgcgttaacccgtcgatttgct
gtgatttctggtggtccaggcacgggtaaaacgacgacagtaaccaaattgcttgccgct
ttgattgaacaggcgacgcacgagaaaaacctaaccatcaagctggtggccccgacgggg
aaagcggcggcgcgattaaccgagtccattggtaaagcggtgcaagagctgccagtttct
ccggagctaaaagccaaaattccgactgaatcaagcaccttacatcggttgctgggcgcg
attcctaatagcgcagaattccgtcacaacaagcaaaatccacttcatttggatatttta
gttatcgacgaagcgtcgatggtcgatttgccaatgatgtacaaagtggtcgatgcctta
ccgaaacatgcgcggctgattttgctaggtgataaagaccaacttgcttcagttgaagct
ggggctgtgttgggtgatatctgttcgttccatgcattgggctatggcaaagagcaggca
tcagccatcgcaaaactgacgggtttcgatactttagtgcatacgggtaacagtgcatct
agcattgccgatagtttatgtatgctgcaaaagagctaccgatttgatgctcgctcaggc
attggtcagttggcaaaagcggttaactcaggttctgctgcgagcgtagataacgtctgg
gcgcgtgacttttctgatatcgaacatttcgcgctaagtagtcagcactacaaccaaatg
atgcagacgttggtgcaggaatacggtcgttacctcaaacgcattggacaacaggaaacc
gatcctgaaaccggagagccagagtcgctaacgcgtaaagccaaagcggtgttagatacc
ttcaaccaatgccgactgctgtgcgcgatccgtgaaggtgacttcggtgtggctgggcta
aaccaacgcatcgagaaagcgctcgcggcgcgcaagttcattcaagttcaggatgaaatt
tggtatcacggcagacccgtcatggttacgcgtaatgatcacggtttaggtttgtataac
ggtgatattggtatttgtatgcgagatgacagtgaagatgaaccgcgtttgaaagtcttt
ttcgagttacctgacggcagtgtgaaatcggtcttgccaagccgagtacctgaacatgaa
acggcttacgccatgaccatccacaaatcgcaaggcagtgaatttgattacaccctgatg
attttgccaccagactttagcccgatattaactcgtgagttgatttacacaggcattacc
cgcgcgaaaaagcgtttagctctttacgccgaactcaatgttctgaagcgaggcattaaa
gtgaaaaccactcgtgcgagtggtttagtacagcagcttactaactaa
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