Vibrio sp. D3: ACHFJ9_19920
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Entry
ACHFJ9_19920 CDS
T11387
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vii Vibrio sp. D3
Pathway
vii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHFJ9_19920 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vii03019
]
ACHFJ9_19920 (pcnB)
Enzymes [BR:
vii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
ACHFJ9_19920 (pcnB)
Messenger RNA biogenesis [BR:
vii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACHFJ9_19920 (pcnB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
XJJ26344
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Position
2:2598479..2599846
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AA seq
455 aa
AA seq
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MHMNTNDYTPSEPATIPELALNVITREEHNISRKQISDNALKVLYRLNGAGFDAFLVGGG
VRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQ
EQKNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIEDLED
RLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEE
SLKLLQSGHGLETYHLLREYNLFQQLFPAIAAHFTEDYSSHTEQMLDLVLDSTDMRIEDG
KRINPAFMFAAMLWYPLCAKADELMEERNLGHYDAIMEASNIILDEQVRTIAIPRRHTAT
IREIWQLQLRLPRRNGKRAFRLMELNKFRAGFDFLEMRGEIEGGDTQKLAKWWETFQNAG
REMRQAMAADLDGQSPKSGQRRRKTYRKKKSKPKS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcacatgaatacaaacgactatacaccaagcgaacctgccactattccagagctcgct
ctcaatgtaataactcgtgaagagcacaacatttcgcgtaagcagatcagtgataatgca
ctgaaggtactgtaccgcctaaatggtgctggtttcgatgcttttcttgtgggtggcggg
gttcgagacttactgcttggacagaaaccaaaagattttgacattgcgaccaacgcaacg
ccggaacagatcaaacagctatttcgtaactgccgtttgattggtcgccgcttccgcttg
gctcacattatgtttggccgagatatcattgaagtagcgacattccgcggtcaccaccaa
gagcaaaagaataagagcatctctcagcaatcgaaagaaggaatgctgctgcgggacaat
gtctacggcaccatcgatgaagatgctgagcgccgtgatttcacgattaactcgatgtac
tacaacatcgcggattactcgattcacgactacgcacgtggtattgaggatttagaagat
cgcctcattcggctgattggcgatccagaaacacgctaccgtgaagacccagtacgtatg
ttgcgtgcagttcgcttcgcagtaaaactggactttgatattgaagaagacaccgcggca
ccaatcgaacacatggcaccgttgctcggtgacattccgtcagcgcgtctttttgaagag
tcactcaagttattgcaatccggtcatggcctagaaacctaccacctactgcgtgagtac
aacttattccaacagctattcccggcgattgcagcgcactttacagaagattactcctct
cacactgagcaaatgttggatcttgtcctagattctaccgacatgcgcatcgaagatggg
aaacgcatcaatccagcatttatgtttgctgcaatgctgtggtacccactgtgtgcgaaa
gccgatgaactgatggaagagcgcaacctaggccattacgacgctattatggaagcgagt
aacatcattcttgatgaacaagttcgtacaattgccattccaagacgccacaccgcaacc
attcgcgagatttggcagctgcagctgcgccttcctcgacgtaacggtaaacgtgcattc
cgtcttatggagctcaataaatttagagctggctttgattttcttgaaatgcgcggtgaa
attgaaggtggtgacactcagaagcttgccaagtggtgggaaactttccaaaatgcaggc
cgagaaatgcgtcaagcaatggctgccgacctagacggtcaatcaccgaagagtggtcag
cgccgccgtaaaacctatcgcaagaaaaagagtaagcctaagtcatga
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