Vibrio sp. D3: ACHFJ9_21675
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Entry
ACHFJ9_21675 CDS
T11387
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vii Vibrio sp. D3
Pathway
vii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACHFJ9_21675 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vii03019
]
ACHFJ9_21675 (rnr)
03016 Transfer RNA biogenesis [BR:
vii03016
]
ACHFJ9_21675 (rnr)
Enzymes [BR:
vii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACHFJ9_21675 (rnr)
Messenger RNA biogenesis [BR:
vii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACHFJ9_21675 (rnr)
Transfer RNA biogenesis [BR:
vii03016
]
Prokaryotic type
tRNA degradation factors
ACHFJ9_21675 (rnr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XJJ26642
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Position
2:complement(2953021..2955525)
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AA seq
834 aa
AA seq
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MSDNIPNDPFADRESKNYENPIPSREFIIEFLEQAGVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHRDGHGWVRPEGSVGKDDDILLPHH
QMKNIIHGDFVLVQPTDNSKRGRREGRLVRVLEERNDQIVGRFFLEYGYSYVVPDDSRIS
QDILIPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPEAVDKQIENLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVYCEKNKEGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYSKVSAILEGDEELRERYRPLVSHLEELHKM
YKVLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQISGRQDQE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATRDVADWLKCEYMQDHVGDELDGVIA
NVTSFGFFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLDDKQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKDKKRAATRSSSKEGGAPRAVPA
IEPTKRPEETGAVSKRNGPKRDDAEGKKKPKVKKARKKKPHSKPKKTKRTKKEA
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatattccaaacgatccttttgcagatcgtgaatccaaaaattacgaaaat
ccaattccaagccgagagtttatcatcgagtttctagagcaagcgggcgttccaatgaat
cgcaacgacttgtttgaggcactaaagcttgagggcgaagagcaatacgaagggttgcgt
cgtcggctacgtgcgatggagcgagatggtcaactggtgtttacccgccgtcagtgctac
gcattgcctgaaaaacttgaaatggtgaaaggttacgtgattggtcatcgtgatggccac
ggttgggtgcgtccagaaggcagcgtcggcaaggatgatgatattctgttaccgcaccat
caaatgaagaacatcatccacggtgactttgttttagtgcaacctacagacaacagcaag
cgcggtcgtcgtgaagggcgcttggttcgagtgttagaggagcgtaatgatcaaatcgtc
ggtcgtttcttcctcgaatatggttattcctatgttgtccctgatgactcgcgtatcagc
caagatattctgatcccaaatgagcacaaagcgggtgcacgcatgggtaacgtggtcgtg
attgaaattactgatcgtggctcacgctcacgtggcatgatggggaaagtggttgaagta
cttggtgaaaatatggcaccaggtatggaaacgcaaattgcgattcgtacacaccaaatt
cctcacgagtggccagaggccgtcgataaacaaatcgaaaacttgggcgaagaagtacca
gaagaagccaaagttggtcgtgtggatctacgtgagttaccacttgtgaccattgacggc
gaagacgcacgagactttgatgatgctgtttactgtgagaagaacaaagaaggtggttgg
cgtttatgggtagcgattgctgacgtcagttactacgttcgtcctgactctgcgctggat
aaagaagccatcaaccgtggtaactcggtgtacttcccatcgcaagtagtgccaatgcta
ccggaagtgctatcaaatggtttgtgttcacttaatccacaagttgatcgtctgtgtatg
gtgtgtgaaatgaccatctcagagacgggtaaactatcgggctacaagcactacgaagcc
gtgatgaactcgcacgctcgtctcacatatagcaaagtgagcgcgattctagaaggggat
gaggaactacgtgagcgttaccggccgcttgtttctcacctagaagagctgcacaagatg
tacaaagtgctgaaagaagcacgagatcaacgcggtgcaatcgaatttgaaaccgttgaa
accaaatttatcttcaatgcggaacgtaaaatcgaaagcattgaaccagtgattcgtaat
gacgcgcacaagatcatcgaagaatgtatgattttagccaacattgcttcggcatcgctg
gtagaaaaagcgaaagagcctgcgctctatcgtatccacgaatctccaggtgaattacgc
ctgcaaggtttccgtgacttcttaagtgaacttggtcttgagctaaaaggtggtctagag
ccttcaccaacggactatgctgatctcgcacgtcaaatctctgggcgtcaagatcaagag
ttgattcaaaccatgctgctgcgttcaatgaagcaagcggtatacaacgcagataacgcg
gggcactttggattggcactgaaacgctatgcgcactttacgtcgccaattcgtcgttac
cctgacctgttacttcaccgtgcaatcaagtatctgattgcgaaagaagaaggtcgtaat
caagaccggtggacaccaacgggtggctaccattactcgttcgatgatatggacttttac
ggtgaacaatgttcgatgacagagcgccgtgctgatgatgccacacgtgatgttgcggat
tggttgaagtgtgaatacatgcaagaccacgtcggtgacgaactagacggcgtgattgct
aatgtcactagctttggcttctttgtacgtttaacggatttgcacatcgatggtttggtg
catatttctacccttgcgaacgactactatcaatttgacccgattggtcaacgacttatt
ggtgaaagtttcggtaacatctatcgcttaggtgatgcagtaaaagtaaaagtactggct
gttaacctcgatgataagcaaattgactttgaattggtcgaaacaagtcgtaagctacgc
ggtgaaggtaagactgcgaagaaacgcgcagcggaagcaaaacgcaaagcgaaagataaa
aaacgcgctgcgactcgctcttcatcgaaagaaggtggcgcgcctcgcgcagttcctgcg
atagagccaactaagcgtccagaagaaacgggcgcagtgagtaagcgcaatggccccaaa
cgtgatgacgccgaaggcaaaaagaagcctaaagtgaaaaaagcacgtaaaaaaaagcca
cacagtaagccgaagaaaaccaagcgcactaaaaaagaagcgtag
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