Viridibacillus sp. JNUCC-6: JNUCC6_08180
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Entry
JNUCC6_08180 CDS
T06874
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vij
Viridibacillus sp. JNUCC-6
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vij03019
]
JNUCC6_08180
03009 Ribosome biogenesis [BR:
vij03009
]
JNUCC6_08180
Enzymes [BR:
vij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JNUCC6_08180
Messenger RNA biogenesis [BR:
vij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JNUCC6_08180
Ribosome biogenesis [BR:
vij03009
]
Prokaryotic type
rRNA helicases
JNUCC6_08180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Helicase_RecD
AAA_30
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QOV12717
UniProt:
A0A7M2QZ12
LinkDB
All DBs
Position
complement(1635973..1637271)
Genome browser
AA seq
432 aa
AA seq
DB search
MSKYTDYNFQPFLQDAIKKLGFTEPTPIQKEIIPLVLKGKSAIGQAHTGTGKTHSFLIPI
VERIRADKEEVQAVIAAPTRELATQIYAELQKLIEETSIQAKLFIGGTDKQRSIDKLKTQ
PQIVVGTPGRIRDLVDEKALLVYTAPMLVVDEADLAFDMGFIEDIDKFASQMPETLEMFV
FSATVPEKLQPFLKKYMSSPVHIKMDDKKPVAENLDFYLVSTRSKSKNSRLLEVMKTINP
YLAIIFTNTRSQANYVADFLANNGVKAGRIHGDLSPRDRKKVMKQVRDLEFQYIVATDLA
ARGIDIPGVSHVINYELPSDLEFFIHRVGRTARAGNKGTAITIFEPSEEDAIARVEKMGI
PFQPKDIKNGELIDMKERHARQNREKKENEIDKKAKALVRKPKKVKPGYKRNMKWEMDKV
KKRERRLKNRQK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaatatacagattacaattttcaaccttttttgcaagatgcaattaagaaatta
ggtttcacagaaccaacacctatccaaaaggaaataattcctttggtgttaaaggggaag
agtgctatcggtcaagcgcatacaggtacagggaaaacacatagtttccttattccaatc
gtagagcgaatccgtgcagataaagaggaagtgcaagcggtaattgctgcacctactcgt
gagcttgcaacacaaatttatgcagagttgcaaaaactaatcgaagaaacatcgatccaa
gccaaattgttcatcgggggtacagacaaacaacgctcaatcgataaactaaaaacacaa
ccgcaaattgttgtcggtacaccaggacgaatccgtgatttagttgatgaaaaagctttg
ttagtatatacggcgccaatgcttgtggtagatgaagcagaccttgcattcgacatgggc
ttcatcgaggatatcgataaatttgcttctcaaatgcctgaaactcttgaaatgttcgta
ttctcagcaacagtgcctgagaaattacaaccattcttgaaaaaatatatgtcatcacca
gtccatattaaaatggatgataaaaaacctgtagcggaaaatttagatttctatttagta
tcaactcgtagtaaatcaaaaaacagccgtttacttgaagtgatgaaaacaatcaaccct
tatttagctattatattcactaacacacgttcacaagcgaactatgttgctgatttctta
gcaaataatggggtcaaagctggacgtattcacggagacctatcaccacgtgatcgtaaa
aaagtgatgaaacaagtacgtgacttggaattccaatacatcgttgcaacagaccttgct
gcacgtggaattgatattccaggagtcagccatgttattaactacgaattaccttcggat
ttagaattcttcattcaccgtgtaggtcgtacagctcgtgctggtaacaaaggaacggct
atcacaattttcgaaccttcagaagaagatgcaattgcacgtgttgagaaaatgggtatt
ccattccaaccaaaagacataaaaaacggtgaactaattgacatgaaagaacgtcatgca
cgtcaaaaccgtgagaaaaaagaaaacgaaattgataaaaaagcgaaagctcttgtccgt
aaacctaagaaggttaaacctggctataaacgtaatatgaaatgggaaatggataaagtt
aaaaaacgtgaacgtcgtttgaaaaaccgtcagaaatag
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