Viridibacillus arvi: JNUCC6_08220
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Entry
JNUCC6_08220 CDS
T06874
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vij
Viridibacillus arvi
Pathway
vij02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JNUCC6_08220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vij03021
]
JNUCC6_08220 (rpoD)
Transcription machinery [BR:
vij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JNUCC6_08220 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_69
Myo5a
DUF8443
DUF2408
Motif
Other DBs
NCBI-ProteinID:
QOV12725
LinkDB
All DBs
Position
complement(1644596..1645729)
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AA seq
377 aa
AA seq
DB search
MADKSKNIKPVVEHEHTLEEAKKHLVDSGKKNGELTYLEIADKLQSYEMEADQVEEFIEQ
LESKGIELGGKDGDEENLDRLLKGSAAEETFDLNDLSVPPGVKINDPVRMYLKEIGRVDL
LSAKEEIALAERIEQGDDEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA
VEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG
REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA
AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL
RKLRHPSRSKRLKDFLE
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaagtctaaaaatattaaaccagtagttgaacatgaacatactctagaagaa
gcaaaaaaacatttagtagattcaggtaaaaagaatggtgaattaacttacctagagatt
gcagacaaactacaatcctacgaaatggaagcagaccaagtagaagaatttatcgagcaa
ttagaatcaaaaggtattgaacttggtggtaaagacggtgatgaggaaaatcttgatcgt
ctattaaaaggcagtgcagctgaagagacgtttgacttaaatgatttaagcgtacctcca
ggtgttaaaattaatgaccctgtaagaatgtacctaaaagaaattggccgcgtagattta
ttaagtgctaaagaagaaatcgcacttgctgaacgtattgagcaaggtgatgacgaagca
cgtaagagattagctgaagccaacttacgacttgtagtaagtatcgcgaaacgctatgtt
ggtcgtggtatgttattccttgatttaatacaagaaggtaatatggggcttattaaagca
gttgaaaaatttgactatcgcaaaggattcaaatttagtacttatgcaacttggtggatt
cgccaagccattacacgtgcaattgctgaccaagcgagaacaattcgtattccagtacac
atggttgaaacaattaataaattaattcgtgtacaacgtcaacttttacaagacttaggt
cgtgaaccatctcctgaagaaatcggtgaagagatggatttaactcctgaaaaagttcgt
gaaattttgaaaattgcacaagaaccagtttctttagaaacgccaattggtgaagaagat
gattcacacttaggagactttatcgaagactcagaagcacaatcaccatctgatcatgca
gcgtatgaattactaaaagaacaattagaagatgtacttgatacattaactgatcgtgaa
gaaaatgtgttacgtttacgttttggtttagacgatggacgtacgcgtacacttgaagaa
gtagggaaagtatttggcgttacacgtgaacgtattcgtcaaatcgaagcgaaggcacta
agaaaattgcgccatccatctcgaagcaaacgtttaaaagatttcttagaatag
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