Viridibacillus arvi: JNUCC6_16005
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Entry
JNUCC6_16005 CDS
T06874
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vij
Viridibacillus arvi
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vij03016
]
JNUCC6_16005
Enzymes [BR:
vij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JNUCC6_16005
Transfer RNA biogenesis [BR:
vij03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JNUCC6_16005
Prokaryotic type
tRNA splicing ligases
JNUCC6_16005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
UPF0181
RE_EcoO109I
Phage_T7_Gp13
Gp6_C-I
Motif
Other DBs
NCBI-ProteinID:
QOV10085
LinkDB
All DBs
Position
3224445..3225689
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AA seq
414 aa
AA seq
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MIEVKGLHTNAKIFSHIQQDKAVEQVQELCDQPFLHDAKIRIMPDYHAGKGCVIGTTIVL
KDKVVPNLVGVDVGCGVHVTKLAPIDIDFQKLDDTIKKYVPSGTNLHDSDSIRYVTDNFP
KAQQFIASHILNDERSKLSLGTLGGGNHFIEMSQDEDGYLYLCIHTGSRSVGAKIATYYQ
KLAYEKIQRRDVSEIVATLKVQGRFQEIQPALKQYQKETPLIPKDLTYVQGEDFQNYIHD
MKLAQQFAKENRRQIARSIIEHLDFEKYIIEDFDSIHNYIDTDNMILRKGAISAQKGEQL
IIPINMRDGSIIAYGKGNEDWNYSAPHGAGRIMSRTQANKILNLEEYQKTMAGIWTSSVN
KETLDEAPMAYKPMEEILENVRNTVDIKTIIKPVYNFKASENEWPSYRRKKRSK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaagtaaagggattgcatacaaatgccaaaatattctcccacatccagcaggac
aaagcagtagaacaagtccaagagttatgcgaccaaccatttctacacgatgcgaaaatc
cgtattatgccggattatcatgccggtaaaggttgtgtcatcggtacaactatcgtatta
aaggataaagtcgtgccaaacctagtaggagtggatgttggctgtggagtacacgtgaca
aagcttgcaccaattgatatcgatttccaaaaacttgatgatactataaaaaaatacgtt
ccatcaggtactaatttacatgattccgacagtattcgatacgtcacagacaatttccct
aaagcacagcaatttatagcttctcatattttaaatgatgaaagaagtaagcttagtcta
ggtacattggggggcggtaatcatttcatcgaaatgtctcaagatgaggatggctatttg
tatttatgcattcacacagggagccgctcagtaggtgctaaaattgctacttattatcaa
aagttagcatatgaaaagatacaacgccgtgatgtatctgaaatagtagctactttaaaa
gtgcaggggcgctttcaagaaatccaacctgcccttaagcaatatcaaaaagaaacacca
cttattccaaaggatcttacttatgtacaaggtgaagattttcagaattacattcatgat
atgaagctagcacagcaatttgcaaaagaaaaccgtcgccagattgctcgctctattatt
gaacatttagattttgaaaaatatatcattgaagattttgattctattcacaactatatc
gatactgacaatatgatcttaagaaaaggtgccatttctgcacaaaaaggggagcagctc
attatccctattaatatgcgtgacggctccattatcgcttatgggaagggaaatgaagat
tggaactattcagccccacacggtgcagggcgtataatgagccgtactcaagcaaataaa
attttaaatcttgaggaatatcaaaaaacaatggctggtatttggacatcatcagttaat
aaggaaacgcttgatgaagcgccaatggcttataaaccaatggaagaaattcttgaaaat
gtccgtaatactgtagatataaaaacaatcattaagcctgtttataactttaaagcaagt
gagaatgagtggccatcttatcgccgaaagaagcgttctaagtaa
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