Viridibacillus arvi: JNUCC6_17520
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Entry
JNUCC6_17520 CDS
T06874
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vij
Viridibacillus arvi
Pathway
vij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JNUCC6_17520 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vij03021
]
JNUCC6_17520 (rho)
03019 Messenger RNA biogenesis [BR:
vij03019
]
JNUCC6_17520 (rho)
Transcription machinery [BR:
vij03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JNUCC6_17520 (rho)
Messenger RNA biogenesis [BR:
vij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JNUCC6_17520 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
NACHT
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
QOV10366
LinkDB
All DBs
Position
3543177..3544460
Genome browser
AA seq
427 aa
AA seq
DB search
MTTMTISQLEDMKLKDLYALARDYKISYYSKLTKKELIFAILKSRAEQEGYFFMEGVLEI
IQQEGFGFLRPINYSPSSEDIYISASQIRRFSLRNGDKVTGKVRPPKENERYYGLLHVEA
VNGEDPETAKERVHFPALTPLYPDRHIKLETTTTKLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTLLLKEIANAITEKYPESELIVLLIDERPEEVTDIERSVAADVVSSTFDELPENHVK
VAELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALIDTGSRMDEVIYEEFKGTGNLELHLDRSLAERRIFPAIDIR
RSGTRKEELLIPKDQLDKLWAIRKTFSDSSDFAERFLKKLRQTKTNDEFFEQLNSDMKAA
RNGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaatgacaatttctcagcttgaagatatgaaactaaaagatttgtatgcgctt
gcgagagattataaaatttcatactatagtaagctgacaaaaaaagaattaatttttgct
attttaaaatcaagagctgaacaagaaggttacttcttcatggaaggtgtccttgaaatt
attcaacaagagggctttggcttcttaagacctataaattattcaccaagttctgaagat
atttatatctcagcatcacaaattcgtcgatttagtctacgtaatggtgataaagtaaca
gggaaagtgcgcccaccaaaagagaatgaacgctattatggtttattacatgttgaggca
gtcaatggggaagaccctgaaactgcaaaagaacgtgtacatttcccagcattgacaccg
ctatacccggatcgtcatattaaactggaaacaactacaacaaaattatctacacgtatt
atggatttagtggcaccagtaggctttggtcaacgtggacttattgtggctcctccaaaa
gcgggtaaaacattacttttaaaagaaattgcaaacgctattacggagaaatatcctgaa
tctgaacttattgtacttttaatagatgaacgacctgaggaagtaacggatattgaacgc
tcagtagcagcagacgtagttagctcaacattcgatgaattgccagaaaatcacgttaaa
gtggcagagttagtgttagaacgtgctatgcgattagtagagcataagcgtgatgttatt
atcttaatggactctattactcgacttgcgcgtgcgtataaccttgttatacctccaagt
ggacgaactttatcaggtggtattgatcctgctgcattccaccgtccaaaacgcttcttc
ggtgcggcgcgtaatattgaagaaggcggtagtttaacaatattagctactgcattaatc
gatacaggctctcgtatggatgaagtaatttacgaagaattcaaagggacaggtaactta
gagcttcatttagatcgtagcctagcagaacgtcgtatcttcccagctatcgacattcgt
cgttcaggaactcgtaaagaagaactactaattccaaaagaccaacttgataaactgtgg
gcgattcgtaaaacattctcagattcatctgattttgcagaacgattccttaaaaaatta
cgtcaaacaaaaacgaatgatgagttttttgaacagctaaattcagatatgaaagctgct
cgaaacggtaaaggattactgtaa
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