Virgibacillus phasianinus: CFK37_07770
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Entry
CFK37_07770 CDS
T04951
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vil
Virgibacillus phasianinus
Pathway
vil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK37_07770 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vil03021
]
CFK37_07770 (rho)
03019 Messenger RNA biogenesis [BR:
vil03019
]
CFK37_07770 (rho)
Transcription machinery [BR:
vil03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CFK37_07770 (rho)
Messenger RNA biogenesis [BR:
vil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFK37_07770 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA
ATPase_2
Spore_III_AA
NACHT
AAA_24
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ASK62065
UniProt:
A0A220U1Y8
LinkDB
All DBs
Position
1535832..1537112
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AA seq
426 aa
AA seq
DB search
MAELSISHLETLTLKEIYALAKEYKVSYYAKLTKRELIFSILKAQAEKDGFLFMNGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDRVSGKVRPPKENERYYGLLHVDA
VNGDNPESSKERVHFPALTALYPDRLMKLELEPNKLSTRIIDLMTPVGFGQRGLIVAPPK
AGKTMLLKEIANSISKNHPDAKLIILLVDERPEEVTDIERSVASDVDVVSSTFDEVPESH
IKVSELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAID
ILRSGTRKEELLVPKSHLDKIWAIRKTMQDSQGFLDRFLRRLKGSKSNEEFFQQMDEDMT
RRGTKK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattatcaatatcgcatttggagacactaacattaaaagaaatctatgcatta
gcaaaagagtacaaggtctcctattatgcgaaactaacaaaacgtgaacttatcttttcc
attttaaaggcacaggcagaaaaagatggctttttattcatgaacggaattttagaaatc
ataccttcagagggatttggatttttgcgcccgatcaactattcaccaagtgcagaagat
atatacatttctgcatcacaaatccgtcgttttgatttgcgaaatggtgacagggtttca
ggaaaagtccgtccaccaaaggaaaatgaaagatattatggtttattgcacgttgatgca
gtaaatggtgataatcccgagagctcgaaggaacgtgttcactttcctgcattgacagcg
ctttaccctgatcggttaatgaaactggaattagaaccaaataaattgtcaacacgtatc
attgatctaatgacaccggttggatttggccagcgtgggttgatcgttgcaccacctaaa
gcgggtaagacaatgctgcttaaagagattgccaacagcatttcgaaaaatcatcctgac
gcgaaactaatcattttgctggtggatgaacgcccggaagaggtaacagatattgaacgc
tccgtggcttctgatgtagatgtcgtcagttcaacatttgatgaggttccggaaagtcat
atcaaagtatccgaattagtcctagagcgtgccatgcgactagtagaacataaacgtgat
gtcatcgtattaatggacagtatcaccagactggctagagcgtataacttggtaattcca
ccaagtggacgtacattatccggtggtatcgacccggcggcatttcatcgtccaaaacga
ttctttggcgcagcccgaaatattgaagaaggtggaagctttaccatcttagcaactgcg
ttagttgataccggctcacggatggatgacgtaatttacgaagaatttaaaggaacaggt
aacatggaactgcatctcgatcgcagtcttgcggaacgccgtatattcccagcaatagat
atattacgctcaggaacaagaaaagaagagttgcttgttccgaaaagccatcttgataaa
atttgggcaatccgtaaaacaatgcaggattcacaaggctttcttgaccgcttccttcgt
cgcctaaaagggtctaaaagtaatgaagaattcttccagcaaatggatgaggacatgacc
cgtcgaggtacgaaaaaataa
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