Virgibacillus sp. MSP4-1: GWK91_03720
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Entry
GWK91_03720 CDS
T06398
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vim
Virgibacillus sp. MSP4-1
Pathway
vim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWK91_03720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vim03019
]
GWK91_03720
Messenger RNA biogenesis [BR:
vim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GWK91_03720
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QHS22102
UniProt:
A0A6B9YBP6
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Position
complement(728359..730026)
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AA seq
555 aa
AA seq
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MKFVKNDQAAVFALGGLGEIGKNTYGIQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFLTHGHEDHIGGIPYLLREINIPIYGGKLAIGLVKSKLEEHGLLRNAKLH
TIQEDDVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNSEVPGFTLSERVVGQSIREIFSNVEGRIIFATFASNIHRLQQ
AVEAAVNNNRKIAVFGRSMEKNIQVGKELGYIQAPDDAFIEASQINRLPSNEVAILCTGS
QGEPMAALSRIANGTHRQIQIQPDDTVVFSSSPIPGNTISVSRMINMLYRAGAEVIHGSL
NDIHTSGHGSQEEQKLMLRLLKPKYFMPIHGEYRMLVEHMKLASDCGVDPKDSFILDNGD
VLALGKDTASFAGKIPSGSIYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
ASGPDIISRGFVYMRESEDLIKEAQKLVSNHLLKVMERRTSQWSEIKNEITDTIAPFLYE
KTKRKPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaacgatcaggcagcggtttttgcactaggtggtctgggtgagatc
ggaaaaaatacgtatggcattcaattccaggatgaaatcattttaattgatgcaggaatt
aagtttcctgaagacgaactgctgggaattgattatgtcattccggactatacctacctt
gttcaaaaccaggacaaaattaagggattattcctcacccacgggcatgaggaccacatc
ggaggcatcccttatttattacgtgaaattaatatccctatctatgggggtaaacttgcg
atcggtttagtaaaaagtaaattagaagaacatggattattacggaatgcaaagcttcat
accattcaagaggacgatgtgattaaattccgtaaaacatccgtatcctttttccgcaca
acacatagtattcctgactcttacggtattgttgtaaaaacaccaccaggaaatattgtt
catacaggagatttcaaatttgatttcactcctgtaggtgaacctgccaacctgacgaaa
atggcagaaatcggacgagatggggttctgtgtttattatcagatagtacaaacagtgaa
gtccccggattcactctgtctgaacgcgtagtagggcaaagtatacgagagattttcagt
aatgtggaaggaagaattatttttgcaacattcgcttccaatatccaccgcttacaacag
gctgtagaagcagctgtaaacaataatcgaaaaattgctgtatttggacgcagtatggaa
aaaaatattcaggtaggaaaagaattaggttatattcaggcacctgatgatgcttttatt
gaggcatctcagattaaccgtctcccaagtaatgaagtggcaatactatgcacgggatct
caaggtgaacctatggcagccctttcccgtattgccaatggaacacacagacagatccag
attcagcctgatgatacggtggtattttcttcatcaccaatcccaggtaacacaatcagt
gtcagtcgtatgattaacatgctttaccgtgccggggcagaagttattcatggttcatta
aatgatattcatacttccgggcatggatcccaggaagaacaaaagcttatgcttcgttta
ctcaaaccaaaatacttcatgcctattcacggtgaataccgtatgttagtagagcatatg
aaactggccagtgattgtggagttgacccaaaagattcatttattctagataatggggat
gtacttgcattaggaaaagacactgcctcatttgccggtaaaattccttctggttcgatt
tacgtcgatggcagtggtattggcgatattggaaacattgttttgcgggaccgcagaatt
ctttccgaagaaggccttgtaattgttgtcgtcagtatcaatatgaaggaatttaagatt
gcttctggcccggacattatctctcgagggtttgtctatatgagagagtctgaggattta
atcaaagaagctcagaaactggtttccaatcacctgttaaaagtgatggaacgcagaaca
agccaatggtccgaaattaaaaatgaaattaccgacaccattgcaccgttcctttatgaa
aaaactaagagaaagccaatgattctccctattattatggaggtatag
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