Virgibacillus sp. MSP4-1: GWK91_05895
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Entry
GWK91_05895 CDS
T06398
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vim
Virgibacillus sp. MSP4-1
Pathway
vim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWK91_05895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vim03019
]
GWK91_05895
03009 Ribosome biogenesis [BR:
vim03009
]
GWK91_05895
Enzymes [BR:
vim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GWK91_05895
Messenger RNA biogenesis [BR:
vim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GWK91_05895
Ribosome biogenesis [BR:
vim03009
]
Prokaryotic type
rRNA helicases
GWK91_05895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
DUF4422
Cas3-like_C_2
Rep_fac-A_C
Motif
Other DBs
NCBI-ProteinID:
QHS24471
UniProt:
A0A6B9YHZ3
LinkDB
All DBs
Position
complement(1147403..1148839)
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AA seq
478 aa
AA seq
DB search
MGFEEATPIQAKAIPSGMEGKDLIGQAQTGTGKTTAFGIPLVEKVDTTSGNIQGIILAPT
RELAVQVAEELNRIGTKKGIFTLPIYGGQDINRQIKALKKRPQIISATPGRLLDHMKRRT
IRLNNIHTVVLDEADEMLNMGFIDEIEEILGAITSEHQTMLFSATMPKKIEALAQKFMNN
PELIRTKSKEMTVKNIDQHYIDVPEKQKFDVLSRLLDIQSPELAIVFGRTKKRVDELTEG
LKKRGYSAEGIHGDLSQSKRDHVIRLFKEQTIDIMVATDVAARGLDISGVTHVYNFDIPQ
DPESYVHRIGRTGRAGRKGLSLTLVTPREIGHLRAIEQVTKTKIERKSVPTYTDVIEGNK
QSALDQLRESAQQEDNKEYKTMAENLLNDIDSVSLVSAAIKLLTKEPDRTPVHLTSIAPL
RAKKSNNQGNRKRSNNRGYKDRNNKDRYNKGRKPRDRRYNKDQRNKNKKNWGGKENRK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgaggaagctactcctattcaggctaaggctattccttcagggatggaagga
aaggatctgattggacaagctcaaacaggaacaggtaaaacgaccgcattcggtatacct
cttgtggaaaaagtggatacaacaagcggaaatatccagggaattattttagccccaaca
cgggaattagcggtacaggtggctgaggaattaaatcgtataggtacgaaaaaagggatt
tttaccttgcctatctatggtggacaggatataaatcgtcaaattaaagcgttgaagaag
cgtccgcagattatttccgctacacctggacgtttattagaccatatgaagagacgaacc
attcgtttaaacaacattcatactgttgtactggatgaagcagatgaaatgctgaatatg
ggctttattgatgagattgaggaaatacttggagctattacttctgagcatcagacgatg
ttgttctcagcaactatgcctaaaaagattgaagccctggcacagaagttcatgaacaat
ccagagctgatccgtaccaaatccaaggagatgacggttaaaaatattgatcagcattat
atcgatgtacctgaaaaacagaaatttgatgtactcagccgtttactggatattcaatcc
cctgaactggccattgtgtttggacgtacgaaaaagcgagtggacgaactgacggagggt
ttaaagaagcgaggttattccgcagaagggatacacggcgatttatcccaatctaaacgg
gaccatgttattcggcttttcaaagaacagacgatcgatattatggttgccacagatgtt
gctgcccgtggtttagatatctcaggtgtgacacatgtgtacaattttgatatcccacag
gatcctgagagctacgttcaccgaatcgggcgtacaggcagagcaggtcgcaaaggtctg
tctcttactcttgttactcctagggaaatcggacatttacgcgccattgaacaagttacg
aaaacaaagattgaacgaaaatcagttccgacgtatacagacgtgattgaaggaaataaa
cagtctgctcttgatcaattacgagagtcggcacagcaggaagacaataaggaatataaa
acgatggctgaaaatctcctgaatgatattgattcagtgtcgttagtatctgcagccatc
aaactgttaacgaaggaacctgatcgtacacccgttcatttaacatccattgccccactg
cgcgccaaaaaatcaaataatcaaggcaatcggaaacgttcaaataacagaggatataag
gaccgaaacaataaagatcgatacaacaagggtcgcaaaccaagggacagaagatataac
aaagaccaacgaaataagaacaagaaaaactggggcggaaaagaaaataggaaataa
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