Virgibacillus sp. MSP4-1: GWK91_08590
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Entry
GWK91_08590 CDS
T06398
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vim
Virgibacillus sp. MSP4-1
Pathway
vim03030
DNA replication
vim03430
Mismatch repair
vim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWK91_08590 (dnaE)
03430 Mismatch repair
GWK91_08590 (dnaE)
03440 Homologous recombination
GWK91_08590 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vim03032
]
GWK91_08590 (dnaE)
03400 DNA repair and recombination proteins [BR:
vim03400
]
GWK91_08590 (dnaE)
Enzymes [BR:
vim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GWK91_08590 (dnaE)
DNA replication proteins [BR:
vim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GWK91_08590 (dnaE)
DNA repair and recombination proteins [BR:
vim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GWK91_08590 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Ribosomal_S13
THSD1_N
tRNA_anti_2
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QHS23002
LinkDB
All DBs
Position
complement(1669394..1672747)
Genome browser
AA seq
1117 aa
AA seq
DB search
MDIIHLEVHSGYSFLNSLLSIDKLVKAAKGKGFSAVALTDDHVLHGAVQFYERCQNEGIK
PIIGMKTNILSEGTLYEAVLLAKSTKGYESLIHLSSELSKQEQKSISMDAYKHYADNLIT
ILPSNQPAFNYLLFAEQYDEWASIVRSFSNSLPDSSFFIGVRPHQTIDEKQTNLVLKNIC
DQNHQAVVALQDVRYDQSEDYIAFDCLQSMKAGKKWSPQSEQISKQRRHMMNAEEMMRVF
GEEWPEALENMKVIADQCEVHIASGQTLLPHYPTPDGLTSEEYLRKLCYDRIPDKYSENY
EDVDHRLEHELSIIEQMKFSDYFLIVWDFIQFARSQQIMVGPGRGSAAGSLVAYLLDITQ
VDPIHYGLLFERFLNPERRNMPDIDVDFSDHRRDEVIQYVQEKYGSHRVAQIITFGTFGP
RSLLRDLMKTMGIDEQDAAFLIKHIPQQASSLAKALKEAPELTNYVKQSDTLKRLFKIAH
KIEGLPRHHSTHAAGVVLSDRNLTEKVPVLSEDYKVALTQYPMGDLEHIGLLKMDFLGLR
NLSLMEQVINRIRKGENRSFTLEQIPLQDPETFTLLQSGQTSGIFQLESSGMRNVLQELK
PTEFEDVVAVNALYRPGPMDFISTFIKRKHGKEKVTYPHEDLKPILEKTYGVLVYQEQIM
QIAHRAAGYSLGEADLLRRAVSKKKRDILASEREKFINGCLENGYSQDIAEEIYQWIVAF
ANYGFNRSHAVAYSLISYQLAYLKAHYPSYFFASILSSVSFDQDKVQQYIREAKNFSIQI
LPPSVNRSYAGFSVEGKNRIRMALTVIKGVGKQAVDAILDARKNEKFHSLFDFCQRVPLR
VLNRSVIEALVLAGAFDETGKQRSTLLASIDQAMEQGELFGGMTGQESFFEDGLLVEPSY
TETEPFPMLKQLSLEKEVLGMYVSSHPLNTYREQLRAQGMIPISRLKEFQAGKRMKGVAA
VQSLKVIRTKRGDQMAFATFGDETDEMEAVIFPNVYREINPWLQEEMLIYIEGKIDTRNH
QLQWIVEKAVPFDPDLLKTEKTDSRIYIQFKDEDERKQLNYLLQVANEFPGEIPVLVYSS
RKKETYRLTSQYRLNPSSGCLKKLKNFFGYSSVVLKR
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggatatcatccatcttgaggtacatagtggatatagttttttgaacagtcttttatct
atagataaacttgtgaaagctgcaaaaggaaagggtttttctgctgttgctttaacggat
gatcatgttcttcatggagctgttcagttctatgaaagatgtcagaacgaaggaataaaa
ccgattataggtatgaaaacgaatattctctctgaaggaaccctttatgaagcggtactc
ctcgctaaaagtacaaaaggctatgaaagtcttattcatctatcatcggaattgtccaaa
caggagcagaaatcgatatccatggatgcttataagcactatgctgataatctgattacg
attttaccttccaatcagccggcatttaattatctgctgtttgccgaacaatatgatgaa
tgggcatctattgtaaggagtttttcgaattctctccccgattcctcgttttttattggc
gtacgtccacatcaaacaatcgatgaaaaacaaacgaaccttgtattaaaaaatatttgt
gatcagaatcatcaggcagttgtcgctctgcaggatgttcgatatgatcagtcggaagat
tatattgcttttgactgtttacaatctatgaaagccggaaagaaatggtctccccaatct
gaacaaatctctaagcagagaagacacatgatgaacgcggaagaaatgatgagggtcttt
ggagaagaatggccggaagcattggagaatatgaaggtgattgctgatcaatgtgaggtg
catattgcatcgggacaaacgctgctgcctcattacccgacacccgatggccttacttct
gaagaatatttgagaaaactttgctatgatcgaattccggacaaatacagtgaaaattat
gaggatgtagatcatcgactcgagcatgaactatctatcattgaacagatgaagttcagt
gattattttcttattgtttgggactttattcaatttgctcgttcacagcaaatcatggta
ggccctggacgtgggtctgcagcaggatcgcttgtagcctacttacttgatataacacag
gttgatcccatacattatgggctgttattcgagcggtttctgaatcctgaacgaagaaat
atgccggatattgatgttgatttttcagatcatcggagagatgaagtgatacagtatgta
caggaaaaatacggcagtcatcgtgtagcacaaattattacctttggaacctttgggccg
aggtctctgttacgggatttaatgaaaacaatgggaatcgatgaacaggacgcagccttt
ctaataaagcatattcctcagcaggcctcctctttagctaaagctctaaaggaggcaccg
gagctaacaaactatgtaaagcagtcagatacattaaagaggctgtttaaaattgctcat
aaaatagaaggtcttccccgtcatcactccactcatgcagcaggggttgtcttaagtgat
cggaatcttacagaaaaggtacctgttttgtctgaggattataaagtggctttgacacag
tatccaatgggggacttagagcatattggcctacttaaaatggactttttaggcttaagg
aatttatcgctgatggaacaggttatcaatcgtatacgaaaaggagaaaacaggtcgttt
acacttgagcagattcctcttcaggatcctgaaacctttacgttactgcaatcaggtcag
acatcaggaatttttcagcttgagtcttccgggatgcgcaatgttctccaggagttaaag
ccgacggagtttgaagatgttgtagcggtaaatgccttatatcgtccaggacctatggat
tttatttctacatttatcaaacggaagcacggaaaagaaaaagtaacgtatccccatgaa
gatttgaagcccattttggaaaaaacgtatggggttcttgtttatcaggagcagattatg
caaatcgcccatcgtgctgctggctattccttaggagaagcagacttactcagaagagct
gtaagtaagaagaaacgtgatatattagcttctgagagggaaaaatttatcaacggatgc
ttggaaaatggatacagccaggacattgcagaggaaatctatcagtggatcgttgctttt
gctaactatggatttaaccgcagtcatgctgtagcttatagtcttatctcctaccagtta
gcttatttaaaggctcattatccatcgtacttttttgccagtatcttaagctcagtttcc
tttgatcaggataaagttcagcaatacattcgtgaggcaaagaatttctccattcagata
cttcctccttctgtaaaccgaagttatgctggattttcagtagaagggaaaaatcggata
cgaatggcgctgacggttattaaaggagtggggaaacaggctgttgatgcaatcttagat
gccagaaaaaatgagaaatttcattccctttttgatttttgccagcgtgtcccactaagg
gtattgaaccgctctgtcattgaagctcttgtgctggcaggtgcctttgatgaaacaggg
aaacaacgctcaacgttacttgcttccattgaccaggcaatggagcagggcgaattgttt
ggtggcatgacaggtcaggaatccttttttgaagatgggctgttagtagaaccctcttat
actgaaacggagcccttccctatgttgaagcaattatccctcgaaaaagaagtgctggga
atgtatgtttccagtcaccctttgaatacatacagggagcagttaagagcacaagggatg
atcccaatttctaggcttaaggagttccaggcagggaaaaggatgaagggagttgccgct
gtccagtcattgaaggttattcgtacgaaacggggcgaccaaatggcatttgctaccttc
ggagacgaaaccgatgaaatggaagccgtcatttttccaaatgtttaccgggaaattaac
ccgtggcttcaggaagaaatgctgatttatattgaaggaaaaatagatactcgtaatcat
caattgcaatggattgttgaaaaggctgttccctttgatcctgatcttctgaagacagaa
aaaacggactcgcgtatttatattcaatttaaagacgaagatgaacgtaagcagttgaac
tatttgctgcaagtggcaaatgagtttcctggcgagattcctgtattggtttattcaagt
cgaaaaaaggaaacgtatcgattaaccagtcaatatcgtttgaatccttcaagtggctgc
ctgaagaaattaaagaacttttttggctattcatccgtagttttaaaacgttaa
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integrated database retrieval system
