Virgibacillus sp. MSP4-1: GWK91_10010
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Entry
GWK91_10010 CDS
T06398
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
vim
Virgibacillus sp. MSP4-1
Pathway
vim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GWK91_10010 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vim03400
]
GWK91_10010 (uvrB)
DNA repair and recombination proteins [BR:
vim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWK91_10010 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GWK91_10010 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_19
AAA
AAA_16
AAA_7
AAA_30
HEPN_RES_NTD1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHS23262
LinkDB
All DBs
Position
complement(1965118..1967097)
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AA seq
659 aa
AA seq
DB search
MDTQFQLESKYSPQGDQPTAIKELVDGIQKGTKNQTLLGATGTGKTFTVSNVIKEVNKPT
LVIAHNKTLAGQLYSEFKEYFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID
KLRHSATSALFERRDVIIVSSVSCIYGLGSPEEYGEMVVSLRIGMEKDRDALLRDLVDIQ
YARNDIDFQRGTFRVRGDSVEIIPASREEHCLRVEFFGDEIDRIREVDALTGEIIGDREH
VAIFPASHFVTREEKMKRAIANIEKELEERLSELRANNKLLEAQRLEQRTNYDLEMMREM
GFCSGIENYSRHLTFREPGATPYTLLDYFPDDFLLVVDESHVTLPQVRGMFNGDRARKQT
LVDHGFRLPSALDNRPLKFEEFEKHINQSIFVSATPGPYELEHTPKMTEQIIRPTGLLDP
EIDVRPIKGQIDDLIGEVKQRSEQNERVLVTTLTIKMAEDLTDYLKDVGFKVAYLHSEIK
TLERIEVIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSQRSLIQTTGR
AARNAQGKVIMYADKMTDSMQIAIDETYRRREKQISYNEEHGIVPQTIQKDIHDVIKATT
AAEEEEKEDKVQSLTNLSKEEKQKTIEQMEKEMKQAAKDLDFERAAELRDIILELKAEG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
ttggatacgcaatttcagttggaatcaaaatacagcccacagggggaccagcccactgct
attaaagagctggtggatggaattcagaaaggcacgaagaatcagacactgcttggtgct
acggggacagggaagacgtttaccgtatcgaacgtgattaaggaagtgaataagcctacc
cttgtgattgcccataataaaacattggcaggccagctctacagtgagtttaaggagtat
tttcccaacaacgctgtggaatactttgtgagctattatgattattatcagcctgaggcc
tatgtgccgcagacggatacgttcattgaaaaagatgcaagcattaatgatgagattgat
aaattgcggcactcggcgacatccgccttatttgagcgtcgggatgtgattattgtatcg
agcgtttcctgtatttatggcttaggttccccggaggaatatggggaaatggtcgtttcc
ttgcgtataggtatggaaaaagatcgggatgcactgcttcgtgatctcgtggatattcag
tatgcgcgtaatgatattgatttccagcgggggaccttccgtgtgcgtggggactcggtt
gaaattattccggcctcccgtgaagaacactgcctgagggtggaatttttcggtgatgaa
attgatcggatacgggaagtggatgctttaaccggtgaaattattggagaccgtgagcat
gtggcgatattcccggcttcccacttcgtcacccgggaagagaaaatgaagcgtgcgatt
gcaaatattgagaaggagctggaggagcgcttatccgaacttagagccaataacaaactg
cttgaagctcagcggttagagcagcggaccaactatgacctggaaatgatgagggaaatg
ggcttctgttccggaattgaaaactactcccggcatttgaccttccgtgaaccaggagca
acgccttatacattgcttgattacttcccggatgactttctgctggttgtggatgaatcc
cacgtaactcttcctcaggtacggggaatgtttaatggggacagagcccgaaagcagacg
ctggttgatcacggtttccggctgccatccgctttggacaaccgtccgttaaaatttgag
gagtttgaaaagcatattaaccagtcgatttttgtatccgcaacaccaggtccgtatgag
cttgagcatactccgaaaatgaccgagcagattatccgtccaaccggcttactggatccg
gaaattgatgtccgtccaattaaaggacagattgatgacttaatcggtgaagtgaagcaa
cgttcggagcagaatgaacgtgtgcttgtcacaacactaacaattaaaatggctgaagat
ctgactgactacttaaaggatgttggatttaaagttgcctatctccattctgagattaaa
acccttgaacggattgaagtgattcgggatttacgtctcggaaaatatgacgtactggtt
ggtattaacctgctcagagaaggactggacattcctgaggtatccctggtagccattctt
gatgcagataaggaaggattcctgaggtcacagcgctcccttattcagacaacaggacgt
gctgcccggaatgcacagggtaaagtcattatgtatgccgataaaatgaccgattccatg
cagattgccatcgatgaaacctatcggcgcagggaaaagcagatttcctataatgaagag
catggaattgtgccacagacgattcaaaaggatatccatgatgtcatcaaggcaacaaca
gccgcagaagaagaggaaaaagaggataaggtgcagtcgctgacaaacttatcgaaagaa
gaaaagcagaagaccatcgaacagatggagaaggaaatgaagcaggctgcgaaagatctc
gacttcgaacgggcagcagaattacgagatattatcttggagttaaaggcggaaggatga
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