Virgibacillus sp. MSP4-1: GWK91_15395
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Entry
GWK91_15395 CDS
T06398
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vim
Virgibacillus sp. MSP4-1
Brite
KEGG Orthology (KO) [BR:
vim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vim03009
]
GWK91_15395 (rlmD)
Enzymes [BR:
vim01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GWK91_15395 (rlmD)
Ribosome biogenesis [BR:
vim03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GWK91_15395 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
MTS
PrmA
Cons_hypoth95
Methyltransf_11
RrnaAD
N6_N4_Mtase
Methyltransf_23
UPF0020
PCMT
Methyltransf_32
DOT1
Methyltransf_12
TRM
TPMT
Motif
Other DBs
NCBI-ProteinID:
QHS24197
UniProt:
A0A6B9YIH9
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All DBs
Position
3120035..3121411
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AA seq
458 aa
AA seq
DB search
MAKVKPPVAKNETIELEFVDLTHEGSGVGKVNGYPLFVPYGLPGEKAKVKVVKVKKNFGF
GKLLKVLNQSPERIEPPCDVFYQCGGCQIQHMSYKMQLDVKQKQVQDAMRKIGHLEEVPV
HPTIGMEDPWRYRNKVQIPVKGVEGRLETGFYKKRSHDIINMDTCPITDEQNDRMVEAVR
RMAEDAGITPYDEDKHRGILRHIMVRNGKETNEIMVVLVTRTDKLPHQEKIVEEIHKAYP
NVKSIMQNVNPERTNVILGKKTKLLWGEEYIHDSIGETQFAISAKSFYQVNPDQTKSLYD
KALEYADLSGNETVVDAYCGIGTISLFLAQKAKKVYGVEIVPEAVDDAKKNAKLNHIDNA
EFYVGAAEKVMDWWKAQGLRPDVIVVDPPRKGCDETLLKAMLDMKPKRIVYVSCNPSTLA
RDLNILTEGGYETKEVQPVDMFPQTSHVECVAQVELKL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagtgaaaccacctgtggcaaaaaatgaaaccatcgagcttgaatttgtcgat
ttgacccacgaaggttcaggggtaggaaaggtaaatggttatcccctgttcgttccctat
ggattaccaggggaaaaagccaaggttaaagttgttaaggtcaagaaaaattttggattc
ggaaaattactgaaggtcctcaatcaaagtccggagcgtattgaacctccgtgtgatgtg
ttttaccaatgcggcggatgtcagattcagcacatgagctataagatgcaattggacgtg
aagcaaaagcaggtacaggatgctatgcgaaaaattggtcatttagaagaggttcctgta
catccgacaattggtatggaggacccatggcgttatcgaaataaagttcaaattcctgtt
aaaggagtagaaggccgacttgaaacaggtttttataaaaagcgcagtcatgacattatt
aatatggatacgtgtccaatcacagatgaacagaacgatcgcatggttgaagctgtacgc
cgaatggccgaggatgccggtattactccgtatgatgaggataaacaccgcggaattcta
cggcatatcatggtccgtaatggcaaggaaaccaacgagataatggttgtgcttgtaacc
aggacggacaagcttccgcatcaggagaagattgtcgaggaaattcataaggcctatccg
aatgtaaaatcgattatgcaaaacgtaaatcctgaacggacaaatgttatcctaggtaaa
aaaacaaaactcctatggggagaagagtacattcatgattccattggggaaacccaattt
gcgatttcagcgaagtctttttaccaggtaaatcctgatcagacgaaatccctgtatgac
aaagcactggaatacgccgatttaagcggcaatgaaaccgtggttgatgcctactgcggg
attggaaccatttctcttttcctggctcagaaagccaaaaaggtgtatggagtagaaatc
gttcctgaggctgtggatgatgcaaagaaaaatgcgaaactgaatcacattgataatgca
gaattctatgtaggagccgctgaaaaagtgatggactggtggaaagcgcaagggttaaga
cctgacgttatcgttgtcgatcctcccagaaaaggctgtgatgagacactgttaaaggct
atgctggacatgaagccgaagcgaattgtttatgtttcctgtaatccatccactttagca
agagatctaaatatcctaactgagggtgggtatgaaacgaaagaagtgcagccagtggat
atgtttccgcagacgagccatgtggagtgtgtggcgcaggtagagttgaagttgtaa
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