Vulgatibacter incomptus: AKJ08_0088
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Entry
AKJ08_0088 CDS
T04035
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AKJ08_0088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_0088
Enzymes [BR:
vin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AKJ08_0088
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AKJ08_0088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_25
AAA_22
HerA_C
ATPase
ResIII
AAA_11
DUF87
Motif
Other DBs
NCBI-ProteinID:
AKU89701
UniProt:
A0A0K1P8E5
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All DBs
Position
133932..137462
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AA seq
1176 aa
AA seq
DB search
MSALRYEKPAILGRLPKDRHAVIEASAGTGKTYTIEHLVVELVVEAGVPIAEILVVTFTE
KATSELRARVRKLLVDLLALTPDKSAAATVPDERCWILDDEKRAKLERALRDFDSATIST
IHSFCQRILTEHAFANQRLFSEQRVDGREAFSAAFQEALRTDLAVDPEHAALLAVWLESK
TVPDLEKLLHACAGKRGRLLPIWDEPALDRAISAFPVASDFELLLKDEMKAAKGRSATAP
MNRYAFLRDELRSYPSNGAFLEKVAALQSLRKPGREKWLGELRAVLDEIPPGGPAIDALR
EPVAALDDGIVSLEALVVQRFLPCVQARLAGRKQVQGLFDFDDMLSLVRDSLQGAHGEAL
VGLLRERYRYALIDEFQDTDELQWEIFRRIFFESGGKNFLFLIGDPKQAIYRFRGADVET
YLAAKGELVAAGGAREALTENFRSTARLIEAYNRILDQQGDPPFFTRAGIGYEEPVRCGN
QALELLGPDGEPAAPIHVFELPIRKGEMSKDVLLPVLGARLAREIRAITDPVAPSLRFSK
GSGEPERIAPRDIYVLCSTKDDGERVGEELRKAGVPHAHYKQEGLLDTDAARALHDVLAA
VAEPDDHAKRMRAWLSPFFGLRLRDLPSVRDLPPSDPLVQRLLDWKGEADGRRFERLFSR
LLDESGIVRRLVLSDSGDRDLTNFLHLCELLLEALGSTCRTLPELVALLGRWIDGTAKPE
QEDGNQQRLESDRDAVQIMTMHASKGLEAKVVFLVGGVGPRPASSTAAFHDRDGARVTWV
GKPPKVVQTLVDREAEWEDQRLLYVALTRAKARLYLPAYPSDEDGAALKGAYRVLNPRLL
AMRGESDPLFTVETLVGHDDTEDGSVSASVSLRDWEPAYGLLEEVDRTDELNALRAAHQG
YRITSYTQLREGAPKGGHEPERDEFAGESERAAHPADDELPGGAGSGIFLHELLEKVSPR
SVVEAGSPEEFLARTEVGEFFQREAARAGVDRRHLRHAGALVHGALAGRIRLRDGRILEG
IAHAPRLLREAEFLYPIPERSHPRLTQALTGQHLEIRRGFVKGFVDVLFEHDGLAYFGDW
KSDVLPSWSRAAIDERVEKSYRLQAQLYSLALVKMIGVRDEASYEARVGGFLYLFLRGMK
PDGDGTEGVHFERPSWSHILEWERALLEREDLEVAT
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccttgcgctacgagaagccggcgatcctcgggcgcctgcccaaggatcggcac
gcggtgatcgaggcgtcggccgggaccggcaagacgtacacgatcgagcacctggtggtg
gagctcgtcgtcgaagcgggcgttccgatcgccgagatcctggtggtgaccttcaccgag
aaggcgaccagcgagctgcgcgcccgggttcggaagctcctcgtcgatctgctcgccctc
acgcctgacaaatcggcggcggcgaccgttccagatgagcgctgctggatcctcgacgac
gagaagagggcgaagctcgagcgcgccctgcgcgacttcgactcggcgacgatctcgacg
atccactccttctgccagcggatcctcaccgagcacgccttcgccaaccagaggctcttc
tccgagcagcgggtcgatggccgggaggccttctccgcggcattccaggaggcgctccga
acggacctcgcggtcgacccggagcatgcggcgctcctggccgtttggctcgagtcgaag
accgtgcccgacctggagaagctcctccacgcctgcgcgggcaagcgcggacgcctcctc
ccgatctgggacgagcctgcgctcgaccgggcgatctcggccttccctgttgcgtcggat
ttcgagctgctcctcaaggacgagatgaaggccgcgaaggggcgctcggcaacggcgccc
atgaaccgctatgccttcctccgcgacgagctccgaagctacccgagcaacggagccttc
ctcgagaaagtggcggcgctccaatcgctccgaaagcccggccgagaaaaatggctcggt
gagctgcgggccgtcctcgacgagatccctcccggcgggcctgcgatcgacgcgttgagg
gaaccggtcgcggcgctggatgacggcatcgtctcgctggaggcgctggtcgtgcagcgc
ttcctgccgtgcgtgcaggcgcgccttgcggggcgcaagcaggtccaggggctcttcgac
ttcgacgacatgctctcgctcgtgcgcgactcgctccagggcgcgcacggagaagcgctg
gtcgggctgctgcgggagcggtaccgctacgccctcatcgacgagttccaggacaccgac
gagctccagtgggagatcttccggcggatcttcttcgagagcggcgggaagaactttctc
ttcctcatcggcgatccgaagcaggcgatctaccgcttccgcggtgcggacgtggagacc
tacctcgccgccaagggtgagctcgtcgcggccggtggcgcgcgggaggccctcaccgag
aacttccgctccacggctcgcctcatcgaggcctacaaccggatcctcgatcagcagggg
gacccgcccttcttcacccgcgcgggcatcggatacgaggagccggtgcgctgcggaaac
caggcgctcgagctgttggggcccgacggagagcccgcggcgccgatccatgtcttcgag
ctcccgattcgcaagggggaaatgtcgaaggacgtgttgctaccggtgctcggtgcccgg
ctcgcccgggagatccgcgcgatcaccgatcccgtcgctccgagcctgcgcttctcgaag
gggagcggagaaccggagcggatcgcacctcgggacatctacgtcctctgcagcacgaag
gacgacggagagcgcgtcggggaggagctccgaaaggcgggggtcccgcacgcccattac
aagcaggaagggctgctcgataccgacgcagcgcgagcgctccacgacgttctcgcggcg
gtggcggagccggacgaccacgcgaagcggatgcgcgcgtggctctccccgttcttcggg
ctccggctccgggatctcccgtcggtccgggacctgcctccctcggatccgctggttcag
aggctcctcgattggaagggcgaggcggatgggcgccgcttcgagcgtctcttctcgcgc
ctcctcgacgagagcgggatcgttcgccgcctcgtcctctcggactcgggcgatcgcgat
ctcaccaacttcctgcacctctgcgagctcctcctcgaggcgttggggagcacgtgccgg
acgcttcccgagctcgtggcgctcctgggcaggtggatcgacggcacggccaagcccgag
caggaggatggcaaccagcagcggctcgagagcgatcgcgacgcggtccagatcatgacg
atgcacgcgtcgaaggggctcgaggcgaaggtggtcttcctggtcggcggcgttggcccc
aggccggcgtcgagcaccgccgcctttcacgaccgggacggagcgcgggtgacctgggtc
ggcaagccgcccaaggtggttcagaccctcgtggatcgggaggccgagtgggaggaccag
cggctcctctacgtcgccctcacgcgggccaaggcgcgcctctatctccctgcgtacccg
agcgacgaggatggagccgctctcaagggtgcgtaccgcgtgctcaacccccgcctcctc
gcgatgcgaggcgagagcgatccgctgttcaccgtggagaccttggtcggccacgacgac
accgaagatggctccgtgtcggcgagtgtttccctgcgtgattgggagcctgcatatggc
cttctggaggaggtggaccgcaccgacgagctgaatgcgctccgggcggcacaccaggga
tatcggatcacctcgtacacccagctccgcgagggcgcgccgaagggcggccacgagccg
gagcgcgacgagttcgcgggcgagagcgagagggcggcgcatcccgccgacgacgagctc
ccgggcggggccggctccggaatcttcctccacgagctcctcgagaaggtctcgccacgg
agtgtggtcgaggcgggctcgccggaggagttcctcgccaggaccgaggtgggcgagttc
ttccaacgggaggcggcgagggccggcgtggaccgccggcaccttcgacacgccggcgcg
ctggtgcatggggcgctggccgggagaatccggctgcgcgatggtcggatcctcgagggc
atcgctcacgctcctcggctcctgcgcgaggcggagttcctctacccgatcccggagcgc
tcgcatccgaggcttacccaagcgctcacgggacagcacctcgagatccgccggggcttc
gtgaagggattcgtggacgtgctcttcgagcacgacggactcgcctacttcggcgattgg
aagagcgacgtgctcccgtcgtggtcccgcgctgcgatcgacgagcgcgtggagaagagt
taccgcctgcaggcccagctctactcgctcgcgctggtgaagatgatcggcgttcgggac
gaagcctcgtacgaggctcgggtgggcggcttcctctacctcttccttcgcgggatgaag
ccggacggcgacgggacggagggcgttcacttcgagcgtccatcctggtcacatatcctc
gagtgggagcgcgcgctgctggagcgagaggatctcgaggtggcgacgtga
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