Vulgatibacter incomptus: AKJ08_0280
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Entry
AKJ08_0280 CDS
T04035
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03410
Base excision repair
vin03430
Mismatch repair
vin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AKJ08_0280
03430 Mismatch repair
AKJ08_0280
03440 Homologous recombination
AKJ08_0280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_0280
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AKJ08_0280
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AKJ08_0280
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AKJ08_0280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AKU89893
UniProt:
A0A0K1P8N4
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Position
353511..355250
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AA seq
579 aa
AA seq
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MRLVYHAPVRWELLPEENAADGLAGDLGCHPLVAGILYRRGVRSAEEAERFLRPRLADLP
DPSLLAGIEPAVARIVRAIDAGERITAYGDYDVDGVTSTTLLVSFLRACGADVDFYVPHR
LEEGYGLNLEAVAHLAERGTRLLVTLDCGVTAVAEVDEAIRLGLEVVVVDHHTTPAELPR
AAAILNPWQPGCTYPTRHLCAVGVTFLLCAALRRSLRARGRFAQRPEPNLKSYLDLVALG
TIADVVPLTEANRLLVREGLEVLARTKRPGLQALKRVAGVEPDGAVTAGQVGFRLGPRIN
AAGRLDDAGKAVELLLCDDPARAERLARELDAANAERQAIERGLVDEALVLAESQPGACG
LVLAGDGWHPGVVGIVASRVVSKLHRPAVVIGIDPETGVGKGSGRSISAFDLYGALSRCS
EHLERYGGHKHAAGVTVARESLEDFRRAFEREAEAQLAGHDLTPVCRVDGTLRPSDVNET
LCEALEALAPFGAGNPEPVLALMGVRARGRIVGGTDRGPGHLKLTLDAAPTADAIGFGMG
DRLGELSGPVDLAFTLGFNEFRGERRVQLGLRDLRPTRS
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
gtgcggctcgtgtaccatgcgcccgtgcgctgggagctcctgccagaagagaacgcagcc
gatggcctcgccggagatctgggctgccatccgctcgtcgccggcatcctctaccggagg
ggcgtgcggagcgccgaggaggcggagcgcttcctccggccgcgcctcgccgatctgccg
gatccttcgctcctggccggcatcgagcccgcggtggcgcggatcgtgcgggccatcgac
gccggcgagcgtatcacggcctacggcgactacgacgtcgacggcgtcacgtccacgacg
ctgctcgtctcgttcctgcgggcgtgcggcgccgacgtggacttctacgtgccccaccgc
ctggaggagggctacggcctgaacctcgaggccgttgcgcacctcgcggagcggggcacc
cgcctcctggtcacgctggactgcggcgtgaccgccgtggccgaggtggacgaggcgatc
cgcctgggcctcgaagtggtcgtggtcgatcaccacaccacccccgccgagctcccccgc
gccgcggcgatcctcaacccctggcagcccggctgcacctatcccacgcggcacctctgc
gcggtgggcgtgaccttcctcctctgcgccgccctccggcgaagcttgcgggcgcggggc
cgattcgcccagaggcccgagccgaacctcaagagctacctcgacctggtggcgctcggc
accatcgccgacgtggtgccgctcaccgaggcgaaccgcctcctcgtgcgcgagggcctc
gaggtcctcgcgcggacgaagcgccccggcctgcaggccctgaagcgcgttgcgggggtg
gagcccgacggagcggtgacggcaggccaggtgggcttccgcctcggcccgcggatcaac
gccgccggccgcctcgacgacgcgggcaaggccgtggagctcctgctctgcgacgatccg
gcgcgggcggagcgcctcgcccgggagctggacgccgccaacgcggagcgccaggccatc
gagcgaggtctcgtcgacgaagccctcgttttggcggagagccagccgggcgcctgtggg
ctggtccttgccggcgacggctggcatccgggcgtcgtgggcatcgtcgcgtcgcgcgtc
gtcagcaagctccatcggcctgcggtggtcatcgggatcgatcccgagaccggagtgggg
aaggggagcggccgttccatttccgccttcgatctctacggcgcgctctcgcgctgcagc
gagcacctcgagcgctacggcgggcacaagcacgccgccggcgtcaccgtcgcccgcgag
tccctggaggacttccggcgcgccttcgagcgtgaggccgaggcgcagctcgccggccac
gacctcacccccgtctgccgcgtcgacgggaccctccggccgtccgatgtgaacgagacc
ctctgcgaggcgctggaagcgctcgctcccttcggcgcaggcaacccggagcccgtcctc
gccctcatgggcgtgcgggcgcggggccgcatcgtcggcggcaccgatcggggccccggc
cacctcaagctcaccctcgacgccgcccccaccgccgacgccatcggcttcggcatgggc
gaccggctcggcgagctctcgggcccggttgatctcgcgtttaccctgggtttcaacgag
ttccggggcgagcgccgcgtccagctcggcctgcgcgacctgcgcccgacccgatcgtag
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