Vulgatibacter incomptus: AKJ08_1835
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Entry
AKJ08_1835 CDS
T04035
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKJ08_1835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vin03019
]
AKJ08_1835
03009 Ribosome biogenesis [BR:
vin03009
]
AKJ08_1835
Enzymes [BR:
vin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AKJ08_1835
Messenger RNA biogenesis [BR:
vin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKJ08_1835
Ribosome biogenesis [BR:
vin03009
]
Prokaryotic type
rRNA helicases
AKJ08_1835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AKU91448
UniProt:
A0A0K1PD27
LinkDB
All DBs
Position
complement(2185610..2187520)
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AA seq
636 aa
AA seq
DB search
MHNMDEKNLPAETPETPAMPAGESPSDYVAGIPYTELPLSPELQRAIAEHGYTHPTPVQA
QAIPKVLAGGDLIVRSKTGTGKTAAFSIPVIEKIPEGSRKAQALVLCPTRELAIQVAQEA
TELAKYKDLRVAAIYGGASMGAQITALQEGAEIIVGTPGRVYDHIRRGTLDLSQAIFGVL
DEADEMLSMGFFEEVTRILDCLPKTRQTLLFSATVPPEIERMIRKYLRSPETLLLSGDVY
TVEGITHVAYKMVEDYPKPRNLLYLLELENPENAIIFANTRDDTALVAAVLNRNGYDAEM
LSGELAQKERERVMAKVKRGEVRYLVATDIAARGIDISDLTHVINYSLPEDPAVYLHRVG
RTGRIGKTGTAISLVGGRDYMIQATLERQYTIEFEKRTLPSAEEARKLWTERHVVELREG
MGSSAFEAFIPLAQELKKRTDGEFLIAYALKQFFTHRRMEKIALQQKAEGEVEAAPPPRA
KPSRGAEGKGRGSERAEGRRKPKEAEGRRPRRGEKKAEGELSSLEPAVHVAPAPGVETPD
TPPMDELGKEARAPRSAKLWVSLGEDDGLDAEGVKAALAEAAGADAAAIERVEVRPAHSF
VFVPTDAAEAFLAANGKARGEKELKVEKARRRPPRR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
ttgcacaacatggacgaaaagaacctgccggccgagacgccggagacgccggcgatgccg
gctggcgaaagcccgagcgactacgtcgccgggatcccctacaccgagctccccctctcg
cccgagcttcagcgcgcgatcgcggagcacggctatacccatccaacccccgttcaggcc
caggccatcccgaaggtgctcgcgggcggcgacctgatcgtccgctccaagaccgggacc
gggaagacggccgcgttctcgatccccgtgatcgagaagatccccgaggggagccgtaag
gcccaggccctggtgctctgccccacccgcgagctggcgatccaggtggcccaggaggcc
accgagctggcgaagtacaaggacctgcgcgtggccgcgatctacggcggcgcctcgatg
ggcgcccagatcacggcgctgcaggagggggcggagatcatcgtgggcacgccggggcgg
gtctacgaccacatccgccgcggcaccctcgacctctcgcaggctattttcggcgtcctc
gacgaggccgacgagatgctctcgatgggcttcttcgaggaggtgacccggatcctcgac
tgcctgcccaagacccgccagaccctgctcttctccgcgacggtgccgcccgagatcgag
cggatgatccgcaagtacctgcgctccccggagacgctgctgctctccggcgacgtctac
accgtggaggggatcacccacgtcgcctacaagatggtggaggactatccgaagccccgg
aacctcctctacctcctcgagctggagaacccggagaacgcgatcatcttcgcgaacacc
cgggacgacacggcgctggtggcggcggtgctgaaccgcaacggctacgatgccgagatg
ctctccggcgagctcgcgcagaaggagcgcgagcgggtgatggcgaaggtgaagcggggc
gaggtgcgctacctggtggcgaccgacatcgcggcccgcgggatcgacatctccgacctc
acccacgtgatcaactactcgctccccgaggaccccgccgtctacctccaccgggtgggc
cgcaccggccggatcggaaagaccggcaccgcgatctcgctggtgggcggccgcgactac
atgatccaggcgacgctcgagcggcagtacaccatcgagttcgagaagcggaccctcccc
tccgcggaggaggcgcgcaagctctggaccgagcggcacgtggtggagctccgggagggg
atgggatcgtcggccttcgaggccttcatcccgctggcgcaggagctgaagaagcggacg
gacggcgaattcctcatcgcctacgcgctcaagcagtttttcacccaccgccgcatggag
aagatcgctctgcagcaaaaggccgagggcgaggtggaggcagcgccgccgccgcgcgcg
aagccttcgcgcggcgcagagggaaagggcaggggcagtgagcgggccgaagggcgccgc
aaaccgaaggaggccgagggccggcgcccccgccgcggcgagaagaaggccgaaggcgag
ctctcgtcgctcgagcctgccgtgcacgtggccccggcgcccggcgtcgagacgcccgac
acgcctccgatggacgagctcggcaaggaggcgcgtgcgccccgttcggcgaagctctgg
gtgtccctgggcgaggacgacggcctcgacgcggagggcgtgaaggccgcgctcgcggag
gcagccggcgcagacgcggcggcgatcgagcgggtcgaggtccgccccgcccactccttc
gtcttcgtgccgaccgacgcggccgaggccttcctcgcggccaacggaaaggcgcggggc
gagaaggagctcaaggtcgagaaggcccggcgccgcccgccgcgtcgctga
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