Vulgatibacter incomptus: AKJ08_2069
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Entry
AKJ08_2069 CDS
T04035
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AKJ08_2069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vin03021
]
AKJ08_2069
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_2069
Enzymes [BR:
vin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AKJ08_2069
Transcription machinery [BR:
vin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AKJ08_2069
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AKJ08_2069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AKU91682
UniProt:
A0A0K1PDU7
LinkDB
All DBs
Position
complement(2448152..2452288)
Genome browser
AA seq
1378 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFSAIRISLASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNILDITLKDLEKVLYCESYIVIDPKNTDLEPCELLSEDRYRKLQDELGDEAFDAG
MGGEAVRELLRKIDVNPLCEELRKDMREATSDAKRKKLAKRLKVMEAFKDSGNKPEWMML
EVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHQCGLPKVMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILEEVIKEH
PVLLNRAPTLHRLGIQAFEPVLTEGKAIRLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPASGKPIIVPTQDIVLGVYYMTRAREFAKGEGKIFSDPEEVRAAYDH
GEVDLQAKIICRMDGKRTDTTVGRVLLAEIMPSAIEFSVYNRVLGKKELGGLIDICYRLS
GEKETVLLADRLRTVGYNNATKAGISVALKDMIIPSAKARFLDDAQKEVKEIEEQYLEGL
ITDGERYNKVIDIWAQVTEEVASEMMTQISTEVATRDGEERRQPSFNPIFIMADSGARGS
AQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDAIINEVDCGTMDGIVASSLIEGGEIIEPMGERILGRVALEDVLDPVT
GEVLVASNEEIDESNVHKIENAGIDRVKIRSVLTCQARRGICQECYGRDLARGRKANVGE
AVGVIAAQSIGEPGTQLTMRTFHIGGAASRRAEQSTIENRTAGTIKFFNLHTVTRNDGSL
VTMNRNGALIIVDDSGRERERYTVVYGAKLLVKEGDKVEPASLLAEWDPYAMPILTEVGG
TVQFDDIVEGVTMSEQLDEVTGLSRKVVIESKDADSRPRITLKDAQGNAMLLPGTDQEAR
YFLPVGANINVAHEDEIGPGDVLARMPRETTKTKDITGGLPRVAELFEARKPKEFAVISE
IDGVVSFGKDTKGKRKVVVTPEVDGKQRPELAKEYLISKGKHISVHQGDRVTAGEALMDG
AANPHDILKVLGAQELSAFLVDEIQEVYRLQGVKINDKHIEVIVRQMLRRVRITDVGDTN
FLIDEQVEKFVFEEENERVETEGGRAAQGEPLLLGITKASLSTESFISASSFQETTKVLT
EAAISGKVDYLRGLKENVIMGRLIPAGTGVGSYKHLDIEVETPVDVVAEVESVLAAGE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacatcttcaatttcttcgagaagccgaaggatccgctctctttctcggccatc
cgcatctcgctggcgtccccggacaagatccggcagtggagccacggcgaggtcaagaag
cccgagacgatcaactaccggacgttcaagccggagcgtgacggcctcttctgcgccaag
atcttcgggccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgtggcgtcgtctgcgagaagtgcggcgtcgaggtgatccagtcgaaggttcgtcgcgag
cggctgggccacatcacgctggccacccccgtggcgcacatctggttcctgaagtcgctc
ccgagccggattggaaacatcctcgacatcacgctcaaggacctcgagaaggtgctgtac
tgcgagtcctacatcgtgatcgatccgaagaacacggatctggagccctgtgagctcctg
tccgaggatcgctaccggaagcttcaggacgagctgggcgatgaggccttcgacgccggc
atgggcggcgaggccgtccgtgagctgctccgcaagatcgacgtcaacccgctctgcgag
gagctgcgcaaggacatgcgcgaggccacctcggacgccaagcgcaagaagctcgcgaag
cgcctcaaggtgatggaggccttcaaggactccggcaacaagcccgagtggatgatgctc
gaggtgatcccggtgatcccgccggatctccgtccgctcgtcccgctagacggcggccgc
ttcgccacctcggatctgaacgatctctatcgccgggtgatcaaccggaacaaccgcctc
aagcggctccaggagctcaacgcccccgacatcatcatccgcaacgagaagcggatgctg
caggaggcggtggacgcgctcttcgacaacggccgccgcggcaagaccatcaccggcccc
aacaagcgcccgctgaagtcgctctctgacatgctcaagggcaagcagggccgcttccgc
cagaacctcctcggcaagcgcgtcgactactccggccgctccgtgatcgtggtgggcccg
gagctgcggctccaccagtgcggtctgccgaaggtgatggccctcgagctcttcaagccg
ttcatctacaacaagctcgaagagaagggctacgtcaccaccatcaagtccgcgaagaag
atggtggagaaggagcgccccgaggtctgggacatcctggaagaggtgatcaaggagcac
ccggttctcctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccc
gtgctcaccgagggcaaggcgatccgccttcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggcgaccagatggccgtccacgtgccgctctccatcgaggcgcagatggag
gcccgcgtgctcatgatgagcacgaacaacatcctctcgcccgccagcggcaagcccatc
atcgtccccacccaggacatcgtgctcggcgtctactacatgacgcgcgctcgcgagttc
gccaagggcgagggcaagatcttctcggatcccgaggaggtccgcgccgcgtacgatcac
ggcgaggtcgatctccaggcgaagatcatctgccggatggacggcaagcgcaccgacacc
accgtgggtcgcgtgctcctcgccgagatcatgccgtcggccatcgagttctcggtctac
aaccgcgtgctcggcaagaaggagctcggcggcctcatcgacatctgctaccgcctctcg
ggcgagaaggagaccgtcctcctcgccgaccggctccgcaccgtcggctacaacaacgcg
acgaaggccggcatctcggttgccctcaaggacatgatcatcccgagcgcgaaggcgagg
ttcctcgacgacgcgcagaaggaggtcaaggagatcgaggagcagtacctcgagggtctg
atcaccgacggcgagcgctacaacaaggtgatcgacatctgggcgcaggtgaccgaggag
gtcgccagcgagatgatgacccagatctccaccgaggtggcgacccgggacggtgaggag
cggcggcagccgtcgttcaacccgatcttcatcatggccgactcgggtgcccgaggctcc
gcgcagcagatccggcagctcgccggtatgcgaggcctgatggccaagccctcgggcgag
atcatcgagacccccatcacggcgaacttccgtgagggtctcaccgtgctgcagtacttc
atctccacgcacggtgctcgaaagggtctggccgataccgctctcaagaccgcgaactcg
ggttacctcacccgccgcctcgtcgacgtcgcccaggacgcgatcatcaacgaggtggac
tgcggcaccatggacggcatcgtcgcctcctcgctcatcgagggcggcgagatcatcgag
cccatgggcgagcgcatcctcggccgcgtggccctcgaagacgtcctcgacccggtcacg
ggcgaggtgctcgtcgcttccaacgaggagatcgacgagagcaacgtccacaagatcgag
aacgccggcatcgaccgcgtgaagatccgctccgtgctcacctgccaggcccgccgcggg
atctgccaggagtgctacggccgcgacctggcccgtggccgcaaggcgaacgtgggcgag
gccgtgggcgtcatcgccgcccagtccatcggcgagccgggtacccagctcacgatgcgc
accttccacatcggtggtgcggcgtcgcggcgggcggagcagtcgacgatcgagaaccgc
accgcgggtacgatcaagttcttcaacctccacaccgtgacccgcaacgacggctcgctc
gtcaccatgaaccgcaacggcgcgctcatcatcgtggacgattcgggtcgcgagcgtgag
cgctacaccgtggtctacggcgcgaagctcctggtgaaggagggcgacaaggtcgagccc
gcctcgctcctggccgagtgggatccgtacgcgatgccgatcctcaccgaggtcggcggt
accgtgcagttcgacgacatcgtcgaaggcgtcaccatgtcggagcagctcgacgaggtg
accggtctctcccggaaggtcgtgatcgagtcgaaggacgcggacagccgcccgcggatc
acgctgaaggacgcccagggcaacgcgatgctcctccctggcaccgaccaggaggctcgc
tatttcctccccgtgggcgcgaacatcaacgtggcccacgaggacgagatcggccctggc
gacgtcctcgcccgtatgccccgcgagaccacgaagaccaaggacatcaccggtggtctc
ccccgggtggccgagctcttcgaggcccgcaagcccaaggagttcgcggtcatctccgag
atcgacggcgtggtctccttcggcaaggacaccaagggcaagcgcaaggtcgtcgtcacc
cccgaggtggacggcaagcagcggcccgagctcgccaaggagtacctgatctccaagggc
aagcacatcagcgtgcaccagggcgaccgggtcacggctggcgaggccctgatggacggc
gcggcgaacccgcacgacatcctcaaggtgctcggtgcccaggagctctcggccttcctc
gtggacgaaatccaggaggtctaccggctgcagggcgtgaagatcaacgacaagcacatc
gaggtcatcgtccggcagatgctccgccgggtgcggatcaccgacgtgggcgacaccaac
ttcctcatcgacgagcaggtcgagaagttcgtcttcgaagaggagaacgagcgggtggag
accgagggcggacgcgctgcccagggtgagcccctcctcctcggtatcaccaaggcgtcg
ctctccaccgagtcgttcatctccgcgtcgtcgttccaggagaccaccaaggtgctcacc
gaggcggcgatctccggcaaggtcgactacctgcgcggcctgaaggagaacgtcatcatg
ggccggctcatccccgccggcaccggcgtcggctcctacaagcacctcgacatcgaggtg
gagacgcccgtcgacgttgtcgccgaggtcgaatcggtgctcgcagcgggagagtaa
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integrated database retrieval system
