Vulgatibacter incomptus: AKJ08_2070
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Entry
AKJ08_2070 CDS
T04035
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AKJ08_2070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vin03021
]
AKJ08_2070
03400 DNA repair and recombination proteins [BR:
vin03400
]
AKJ08_2070
Enzymes [BR:
vin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AKJ08_2070
Transcription machinery [BR:
vin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AKJ08_2070
DNA repair and recombination proteins [BR:
vin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AKJ08_2070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AKU91683
UniProt:
A0A0K1PDR4
LinkDB
All DBs
Position
complement(2452405..2456628)
Genome browser
AA seq
1407 aa
AA seq
DB search
MAPTIQNNFRIRKSFAKIQKIIDIPNLIDIQKQSYDQFLQVDVPAEKREDTGLQGVFKSV
FPIKDFNETSSLEFVSYHLEKAKYDVDECHQRGMTYSAPIKVVVRLVVWDKDETTGAQSI
RDVKEQEVYFGEIPLMTVNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA
RIIPYRGSWLDFEFDHKDILYVRIDRRRKLPVTVLLRALGGVPDTAKRKPIEWNGTAEEM
LNYFYDTETIFLGSKKDEFSKSVELELLKGQRATHDIVNPKTGEVIVKKNRKFTSGAIKK
IEAAGIDRLPLDPDELWTKVAAHDVVDESTGEVLLEVNDQVSSEAVEELRARGVNEFKVL
FIDNLNVGPHLRNTLMLDKVSSPEEAIMEIYKRLRPGDPPTPETATNLFLNLFFNSERYD
LSRVGRLKLNYRLHDRLPEEEREALDTPVLTKRDVLEAVRVLVDLKNGHGNIDDIDHLGN
RRVRAVGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQ
LSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIG
LIASLSTFARVNEYGFVETPYRRCEDGKASAEVTFYSALEEEKHTIAQANSLLADDGSFS
EETVSCRKGRGEFVNARPEDVSLMDVSPNQLVSVAASLIPFLENDDANRALMGSNMQRQA
VPLLRTHAPLVGTGIEGTVARDSGVCAVAKRDGIVESVDAGRIVVKADVPASVTDVGSEV
DIYNLIKYTRSNQNTCINQKPIVRKGDRVRKGDVLADGPSTETGELALGQNVVVAFMPWQ
GYNFEDSILLSERISKEDFFTSIHIEEFECVARDTKLGKEEITRDIPNVGEEAMKDLDEA
GMIRIGAEVQPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTV
INAKVFSRKGVDKDERAKEIEAAEEAKLLKDQNDEIKILRDSAYAKIARMLGGKKTSAKL
VDDKGQTLLEKGTELSASVLAGVPQKYWPEIVTDGTEDLVRKVVASFEEQREVIKLVFGE
KISRLKKGDELPPGVIKMVKIYVAIKRKLSVGDKMAGRHGNKGVVSRILPEEDMPYLVDG
TPVDIVLNPLGVPSRMNIGQIMETHLGWAARGMGLKLAEMAEKAGGAAVRKELKATYPGK
ELAAFLDELPDDEVIKLGRRLKNGIHVASPVFDGGVETEIVDLLKQGGLKETGQSILFDG
RTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEV
WAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLIKELQSLGL
DVELLESTPAEAEGEKQAAEPRKASGF
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgacgatccagaacaacttccggattcgcaagagctttgcgaagatccagaag
atcatcgacatccccaacctgatcgacatccagaagcaatcctacgaccagttcctacag
gtcgacgtgcccgcggaaaagcgggaggatactgggcttcagggcgtcttcaagtcggtt
ttccccatcaaggatttcaacgagaccagctccctcgagttcgtctcgtatcatctcgag
aaggcgaagtacgacgtcgacgagtgccaccagcgtggcatgacgtactcggctccgatc
aaggtcgtcgtccgtctggttgtctgggacaaggacgagaccaccggcgcgcagtcgatc
cgcgacgtgaaggagcaggaggtctacttcggcgagatcccgctgatgacggtgaacggt
acgttcatcatcaacgggaccgagcgcgtggtggtgagccagctccaccgttcgccgggc
gccttcttcgaccacgacaagggcaagagccactcctcggggaagctgctctacaacgcg
cggatcatcccgtaccgcggctcgtggctcgacttcgagttcgaccacaaggacatcctc
tacgtgcgcatcgatcgccgccggaagctgccggtgacggtcctcctgcgcgcgctcggc
ggcgtccccgacacggcgaagcgcaagccgatcgagtggaatggcaccgccgaggagatg
ctcaactacttctacgacaccgagacgatcttcctcggctccaagaaggacgagttcagc
aagtcggtggagctcgagctcctcaagggccagcgcgcgacccacgacatcgtcaacccg
aagacgggtgaggtgatcgtcaagaagaaccggaagttcacctccggcgcgatcaagaag
atcgaggctgcagggatcgaccggctgcccctcgatccggacgagctctggaccaaggtc
gccgcccacgacgtcgtggacgagagcaccggcgaggtcctcctcgaggtcaacgaccag
gtcagctccgaggcggtggaggagctccgggcccgcggcgtcaacgagttcaaggttctc
ttcatcgacaacctgaacgtcggcccgcacctgcgcaacacgctgatgctcgacaaggtc
tcctcgcccgaggaggcgatcatggagatctacaagcgcctccggcccggcgatccgccg
acccccgagaccgcgacgaacctcttcctcaacctcttcttcaactccgagcggtacgac
ctctcgcgggtgggccggctcaagctgaactaccggctccacgaccgtctcccggaggag
gagcgcgaggccctcgacaccccagtcctcaccaagcgggacgtcctcgaggccgttcgc
gtcctggtcgatctcaagaacggccacggcaacatcgacgacatcgaccacctcggcaac
cgtcgcgtccgggcggtgggcgagctcctcgagaaccagtaccggatcggtctggtgcgc
atggagcgtgcgatcaaggagcggatgtcgctccaggagatcgagacgctgatgccgcac
gacctgatcaacgccaagccggtgacggcggtgatcaaggagttcttcggctcgtcgcag
ctgtcgcagttcatggaccagacgaacccgctctccgaggtcacgcacaagcggcgtctc
tcggccctcgggcctggcggcctcacccgcgagcgcgcgggcttcgaggtccgcgacgtc
cacccgacacactacggccgcatctgccccatcgagacgccggaaggcccgaacatcggt
ctgatcgcctcgctgtcgaccttcgcccgcgtgaacgagtacggcttcgtcgagacgccg
taccgccgctgcgaggacggcaaggccagcgccgaagtgaccttctactccgccctcgag
gaggagaagcacaccatcgcccaggcgaactccctcctggcggatgacggctccttcagc
gaggagacggtgtcctgccgcaagggccgtggcgagttcgtgaacgcccgtcccgaggac
gtctcgctgatggacgtctcgccgaaccagctggtgtcggtggcggcctcgctgatcccg
ttcctcgagaacgacgacgcgaaccgcgcgctcatgggctcgaacatgcagcgccaggcg
gtgccgctcctccgcacccacgcgccgctggtcggcacggggatcgagggcacggtcgcc
cgcgactccggcgtctgcgccgtggcgaagcgggacggcatcgtggagtccgtcgacgcg
ggccgcatcgtggtgaaggccgacgtgccggcctcggtgaccgacgtgggctccgaggtc
gacatctacaacctcatcaagtacacgcgctcgaaccagaacacgtgcatcaaccagaag
ccgatcgtccgcaagggcgaccgggtccggaagggcgacgtgctggcggacggtccgtcc
accgagacgggcgagctcgccctcggccagaacgtggtcgtcgcgttcatgccgtggcag
ggctacaacttcgaggactccatcctgctctccgagcggatctccaaggaggacttcttc
acctcgatccacatcgaggagttcgagtgcgtcgctcgcgacaccaagctcggcaaggaa
gagatcacccgcgacatcccgaacgtcggcgaggaggccatgaaggacctcgacgaggcc
ggcatgatccggatcggcgccgaggtgcagcccggtgacgtcctcgtcggcaagatcacg
ccgaagggcgagacccagctctcccccgaggagaagctcctccgcgcgatcttcggcgag
aaggccggcgacgtccgcgacagctcgctccgcgtgccccccggcgtggtcggcacggtg
atcaacgccaaggtcttctcgcgcaagggcgtcgacaaggacgagcgcgccaaggagatc
gaggcggccgaagaggccaagctcctcaaggaccagaacgacgagatcaagatcctccgc
gactccgcctacgcgaagatcgcccggatgctcggcggcaagaagacctccgccaagctc
gtcgacgacaagggtcagacgctcctcgagaagggcaccgagctctcggcttccgtcctc
gctggcgtcccccagaagtactggcccgagatcgtcaccgacggcaccgaggacctggtg
cgcaaggtggtcgcgtcgttcgaggagcagcgcgaggtgatcaagctcgtcttcggcgag
aagatctcccgcctgaagaagggcgacgagctgcctcctggcgtcatcaagatggtcaag
atctacgtggccatcaagcgcaagctcagcgtcggcgacaagatggcaggccgccacgga
aacaagggtgtcgtctcccggatcctcccggaagaggacatgccctacctggtcgacggc
acgccggtggacatcgtcctcaaccccctgggcgttccctcccgtatgaacatcgggcag
atcatggagacgcacctgggttgggcagcccgcggcatgggcctgaagctcgccgagatg
gccgagaaggcaggtggcgccgccgtccgcaaggagctcaaggccacttatccgggcaag
gagctcgcggccttcctggacgagctgccggacgacgaggtcatcaagctcggtcgtcgc
ctgaagaacggcatccacgtggcgagcccggtcttcgacggtggcgtcgagaccgagatc
gtcgacctcctgaagcagggcggtctgaaggagacggggcagagcatcctcttcgacggc
cgcaccggcgagccgttcgaccaggacgtcacggtcggcgtgatgtacatgctcaagctg
caccacctcgtcgacgagaagatccacgcccggagcatcgggccgtactccctcgtcacc
cagcagcccctcggcggcaaggcccagttcggcggccagcgcctcggagagatggaagtc
tgggcgatggaggcctacggcgcggcgtactcgctgcaggagttcctcacggtcaagtcc
gacgacgtggtgggccgcacgaggatgtacgaggcgatcgtcaagggcgacaacgtcctc
gagtccggtctccccgagtcgttcaacgtgctgatcaaggagctccagagcctcgggctc
gacgtggagctcctcgagtcgacgccggccgaggcagagggcgagaagcaggcagcggag
ccgcgcaaggcgagcgggttctag
DBGET
integrated database retrieval system
