Vulgatibacter incomptus: AKJ08_3717
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Entry
AKJ08_3717 CDS
T04035
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vin
Vulgatibacter incomptus
Pathway
vin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKJ08_3717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vin03019
]
AKJ08_3717
Messenger RNA biogenesis [BR:
vin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKJ08_3717
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKU93330
UniProt:
A0A0K1PII4
LinkDB
All DBs
Position
complement(4342408..4344054)
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AA seq
548 aa
AA seq
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MLRIIPLGGLGEVGLNAMVFESEDQAFLVDCGIMFPQAEALGVDVVLPDFTYLRELGDKL
KGVVLTHGHEDHIGALPFLLKDRPLPVYGSPFTLGLLAPKLEEFGIRAPLTELAAGSSVD
LGEAFRVEGVRVTHSIPDALGLAIHTPEGLVVHTGDFKIDHSPIDELPTDLQRFARLGGD
GILALLSDSTNSERPGTSLSERQVGRALEEIFAKAKSRVVIATFASNIHRIQQVLDVSRL
FGRKVVLVGRSMQQNTRIASELGLLDIPLGLVVDVEEGRRLRHHEVTVLSTGAQGEPRSA
LMRMALGDPNAPMPVDEGDLVVLSSRFIPGNEVAIGHMVNRLAMRGAEVVYEGAEDLHAS
GHAYREEQRLMLRITNPRHFVPIHGEYRHLVRHVKTAHEVGIPDSSCHLITDGEVLQFEG
GRAFVNGTVASGRVYVDRRGGPDVPELTLRERALIAETGLVTAVVVIDRSTGALVRGPEL
TARGIAVPDEAALLADVRREVHAAVESLSPVLRGDTTLVQEEVRRAVRRAYKRSTERKPV
VLPLVIEL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgctccggatcatcccactcggaggcctcggcgaggtcggcctcaacgccatggtcttc
gagtcggaggaccaggcgttcctcgtggactgcgggatcatgttcccccaggcggaggcc
ctgggcgtggacgtggtcctgccggacttcacgtacctgcgggagctgggcgacaagctg
aagggcgtggtcctcacccacggccacgaggaccacatcggcgcgctgcccttcctgctc
aaggatcggccgctccccgtctacggctcgcctttcaccctgggcctcctcgcccccaag
ctcgaggagttcgggatccgggcgcccctcacggagctggcggcaggcagctccgtggac
ctcggcgaggccttccgggtggaaggcgtccgggtcacccactcgatccccgacgccctc
ggcctcgcgatccacacgccggaaggcctggtggtccacacgggcgacttcaagatcgac
cactcgcccatcgacgagctccccacggacctgcagcgcttcgcgcgcctcggcggcgac
gggatcctcgcgctcctctccgactccaccaactccgagcgccccggcaccagtctctcg
gagcgccaggtgggccgcgccctggaggagatcttcgcgaaggccaaatcccgcgtggtg
atcgccaccttcgcgtcgaacatccaccggatccagcaggtcctcgacgtctcccgcttg
ttcggccgcaaggtggtgctggtcggccgctccatgcagcagaacacgcggatcgccagc
gagctcggcctcctggacatcccgctcggcctcgtggtcgacgtggaagaaggccgcagg
ctccgccaccacgaggtcacggtgctctccaccggcgcccagggcgagccgcgctcggcg
ctgatgcggatggccctgggcgatcccaacgcgcccatgcccgtcgacgagggtgacctg
gtggtcctctcctcgcgcttcatcccgggaaacgaggtcgcgatcggccacatggtgaac
cgcctcgccatgaggggcgcggaggtggtctacgagggcgcagaggacctccacgcctcg
ggccacgcctaccgcgaggagcagcggctgatgctccggatcaccaacccgcgccacttc
gtcccgatccacggtgagtatcggcacctggttcgccacgtgaagaccgcccacgaggtc
gggatccccgacagctcctgccacctgatcaccgacggcgaggtcctccagttcgagggg
ggcagggccttcgtgaacggcacggtggcgtcggggcgggtctacgtcgacaggcggggc
gggcccgacgtccccgagctcaccctccgcgagcgggcgctcatcgccgagacgggcctc
gtcacggccgtggtcgtaatcgaccgctcgaccggcgccctggtccggggtccggagctc
accgcccgcgggatcgcggtgccggacgaggcggccctcctcgcggacgtgcgccgggag
gtccacgccgcggtcgagagcctgagccccgtgctccgcggcgacacgaccctggtgcag
gaggaggtgcgccgcgccgtccgccgtgcctataagcggagcaccgagcgcaagcccgtc
gtgctgccgctagtgatcgagctatag
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