Vibrio sp. NTOU-M3: AB2S62_02505
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Entry
AB2S62_02505 CDS
T10494
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vio Vibrio sp. NTOU-M3
Brite
KEGG Orthology (KO) [BR:
vio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vio03009
]
AB2S62_02505 (rlmD)
Enzymes [BR:
vio01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AB2S62_02505 (rlmD)
Ribosome biogenesis [BR:
vio03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AB2S62_02505 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
RrnaAD
MTS
PCMT
Methyltransf_23
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_12
DOT1
Flavi_DEAD
TPMT
Ribosomal_L22
DREV
Motif
Other DBs
NCBI-ProteinID:
XDE86985
LinkDB
All DBs
Position
I:572042..573367
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AA seq
441 aa
AA seq
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MARFFQPKKKTQLNTKHQSMQVEKLDHHGAGIAYQNKKPVFIEGALPGELVLVQLTESKS
KFSRAKLIKIQQSSAERVEPFCPHYHECGGCDLQHLAIEQQREHKQQTLSQLMRKFAGQS
AQLENPIFTGDKGYRRRARISVMLDKKSKTLKFGFRKKQSKDIVDVTSCPVLEPELNQLM
LPIYDVLKTFSHQEYLGHVELVKADNTRVVVLRHSRPLQQKDHDALLALAQSEQASLYLM
PSNDELNRECGEPPHYCESGVTIPFEPNNFIQVNQSVNEKMVQQALTWLALDEHDRVLDL
FCGLGNFSLPMAKQVQQVVGIEGVDAMVEKAKANAVFNNLTNATFYQANLEQDMSAQSWA
KEKFDKVLLDPARAGADGIVAQLSELGTTKVVYVSCNPATLARDSQSLLAQGFKLTKLGM
LDMFPHTSHLESMALFEKLTN
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgttttttccaaccaaagaagaaaactcaactcaataccaaacaccaatcgatg
caggtagaaaaactcgaccatcatggcgctggtatcgcttatcaaaataaaaagccagtc
tttatcgagggggctttacctggagaactggttttggtgcagctgaccgaaagtaaaagt
aagttttctcgggcgaaactgatcaaaattcaacagagtagcgctgagcgggtggagcca
ttttgtccgcattaccatgagtgtggaggttgtgacttacagcatttagcgatcgaacaa
caaagagagcacaagcaacaaacgctaagccagttgatgcgaaaatttgctgggcaatcg
gctcagttggaaaatcctatttttactggtgataagggctatcgccgccgagctcgaatc
agtgtgatgctagataagaaaagcaaaacgctgaaatttggtttccgtaaaaagcaaagc
aaagatattgtcgatgtaaccagttgtccggtgcttgaacctgaattgaatcaactgatg
ctgccaatttatgatgttttgaagacattttctcatcaggagtaccttggtcatgttgaa
ctggttaaagccgacaatactcgtgtggttgtgttacgtcactctcgacctcttcaacaa
aaagatcatgatgcgttgcttgctttagctcagtcagaacaggcttcgttatatttgatg
ccaagcaacgatgagctcaaccgtgagtgcggtgagccgccacactattgtgaatctgga
gttacgattccatttgagccaaataacttcatccaagtgaatcagagcgttaatgaaaaa
atggtccaacaagctctgacttggcttgcgttagatgagcatgatcgcgtgttagatttg
ttctgtggtttaggcaacttcagtttaccgatggcaaaacaagtgcagcaagttgtcggt
attgaaggggtggatgcaatggttgaaaaagctaaagcgaatgcggttttcaataatcta
accaatgccacgttttaccaagcaaatttggaacaagatatgtctgctcagtcatgggcg
aaagaaaaatttgataaagtactgctcgatccagctagagctggtgctgatggtatagta
gcgcagttatccgaattgggtacgacaaaagtcgtttatgtttcttgtaatcctgctact
ttagccagagatagtcagagcttgctggcacagggttttaaactgactaaactgggtatg
ttagacatgtttccgcataccagccatttagaatcgatggcattatttgaaaaactcacg
aactaa
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