Vibrio sp. NTOU-M3: AB2S62_03375
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Entry
AB2S62_03375 CDS
T10494
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vio Vibrio sp. NTOU-M3
Pathway
vio03030
DNA replication
vio03430
Mismatch repair
vio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB2S62_03375 (dnaE)
03430 Mismatch repair
AB2S62_03375 (dnaE)
03440 Homologous recombination
AB2S62_03375 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vio03032
]
AB2S62_03375 (dnaE)
03400 DNA repair and recombination proteins [BR:
vio03400
]
AB2S62_03375 (dnaE)
Enzymes [BR:
vio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AB2S62_03375 (dnaE)
DNA replication proteins [BR:
vio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AB2S62_03375 (dnaE)
DNA repair and recombination proteins [BR:
vio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AB2S62_03375 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
PabTrmU54_TRAM_dom
Motif
Other DBs
NCBI-ProteinID:
XDE87146
LinkDB
All DBs
Position
I:760341..763820
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHGC
GIKPIIGADFAMQSPEFGEELSKITVLAADNTGYKNLTLLISEAYLRGHVQHQPVIDKEW
LINHAEGLILLSGGKDGEIGKALLKGNQALVNSCVAFYQAHFPDRFYLELTRTGRADEES
YLHFALDLAEQFELPVVATNDVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKKYSPQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVKKSEEGL
EERLEFLFPDAEERAKRRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYNNDEEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKDPVRIESIDLADDTSFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVDEDGAIVYGIGAIKG
VGEGPIEAILVARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMA
SLDDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPPWPEKVWLEGERDTLGLY
LTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVISGQVSFDDFNGGLKMSAREVMDLGAAREKYA
RGVSVSIDESQIDDQFFERFSKILEPHRAGSVPVNVYYQRCDARARIALGTEWRVTPSDT
LLDELKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctaagtttatccaccttcgagttcatagtgacttttccatggtcgacggc
ctgtctaaggtgcctccattggtcaagaaagtggctgaaatggggatgcctgcggtagca
ttgactgatttcacaaacttgtgtggtctcgttaagttttatggtacggctcatggttgt
ggtatcaagccaatcatcggcgccgactttgccatgcagtcaccagaatttggtgaagag
ctgagtaagattacagttctggcagcagacaataccggttataagaatctaacgttactg
atttctgaggcttatcttcgtggtcatgtacagcaccagcctgtaattgataaagagtgg
cttatcaatcatgcagaaggcctgatcttactatctggtggtaaagatggagaaataggc
aaagctttactcaaaggcaatcaggcccttgttaacagttgcgtagccttttaccaagcg
catttcccagatcgtttttatcttgagctgacccgtactggtcgagctgatgaagaaagc
taccttcattttgctttagatcttgcggagcagtttgagcttccggttgtcgcaacaaac
gacgttgtgttcatctcagaagatctttttgacgcccatgaaatccgcgtagcgattcat
gatggttacacacttgaagaccctcgtcgccctaaaaaatacagtccgcaacaatacctt
cgtacagaagaagaaatgtgcgaactgtttgctgatattccagaagcattagaaaacagt
gttgagattgctaaacgctgtaatgtgacggtacgtttaggtgaatacttcttacctgcg
ttccctaccgaaggaatggaagaaaccgagttcttagtaaagaaatcggaagaagggttg
gaagagcgtttggaatttctttttcctgatgcagaagagcgcgcaaagcgccgaccagag
tatgatgatcgcttgaaaattgaattggaagtgatcaacaacatgggtttcccggggtac
tttttgatcgtaatggagttcatccagtggtcgaaagataacgatatccctgtaggccct
gggcgaggttctggtgcaggttcccttgttgcatatgcgttgaaaatcacggatcttgac
ccgcttgaatatgatttgctcttcgaacgtttcttaaacccagaacgtgtttcgatgccc
gatttcgacgtcgatttttgtatggataaacgtgatcaggtgattgatcacgtagcagaa
atgtacggccgcgatgcggtatctcagatcatcacctttggtaccatggctgcgaaggcg
gttatccgagatgtgggccgcgtattagggcatccatttggttttgttgatcgtatctct
aaactggtaccgccagatccgggtatgacactggaaaaggcatttaaagccgagccagcg
ctacctgagctttataataacgatgaggaagtcaaagaccttatcgatatgtgccgcatt
ttggaagggtgtacgcgaaatgctggtaagcacgcgggtggggttgtgatttccccaacc
accattaccgattttgccccgatttatgcggatgccgaaggccatttccccgtaacacag
ttcgacaaaaacgacgtagaaaccgcaggcttagttaaatttgacttcttgggtctacga
actctaaccatcatcgattgggcgttagggttgatcaaccctcgtttagagaaagaaggc
aaagacccagttcgaattgaatcgatcgatttggccgacgacacttcattccgtttgctt
cagaactctgaaaccactgcagtattccagcttgaatcgcgtggtatgaaagagctgatc
aaacgccttcaacctgactgttttgaagatatcatcgcattggtggccttgttccgtcca
ggaccattgcagtcaggcatggtagataactttatcgaccgtaaacatggtcgcgaagcc
atctcataccctgatgaaaagtggcaacatgagtcgttgaaggaaatccttgatccgacc
tacggcattattctctatcaggaacaggtcatgcagatcgcacaggtactgtctggttat
acccttggtggtgcagacatgctgcgacgtgcgatgggtaagaaaaaacctgaagaaatg
gctaagcagcgtgcgacatttgaagatggcgcggtgaagaatggtgttgatggcgagttg
gcgatgaaaatcttcgacttggtagaaaaattcgccggttatggttttaacaaatctcac
tcagcagcctacgccttagtttcttaccaaacgctttggcttaaaacacactttcctgca
gagtttatggcggcggtaatgaccgctgatatggataacacggaaaaagtggttggctta
gtcgacgaatgtttccgaatgaagttaaaggtattgccgccagacatcaatgcgggcttg
tatcgctttaatgtcgacgaagatggtgcgattgtttatggcatcggcgcaatcaaaggg
gttggtgaaggcccgattgaagcaatattggttgcgcgcaataaagatggccactttaaa
gacttatttgacttctgtgctcgtattgatctgaaaaaagtgaataaacgagtcattgag
aaattaatttacgcaggggcgcttgatcgtcttggtcctcatcgtgcagcattgatggct
tcgctggatgatgcggtcaaagcagcaagccaacatcaccaagctgaagcatttggtcag
tccgatctttttggcgtattaactgaagcgccagaagaagttgagcacaaatacactaag
gtgccaccatggcctgaaaaggtttggctggaaggtgagcgtgatacattagggctttat
ttgaccgggcacccaattaatgcctatctcaaggaactcggtaagtacaccagttgtcga
ctaaaagacgccacgccaacgcgtcgtgatcaatccgttactgtggcaggtttagttatt
gccgctcgagtgatgacaactaaacgtggaacccgaattggtatcatgacgttggatgat
cgcagtggacgaatggaagtcatgctgttctctgatgcgcttgatcgttatgctgaactt
ctcgaaaaagacaaaattttggtgatttctggacaggtcagctttgatgatttcaatggt
ggtcttaaaatgtccgcgcgcgaggtcatggatcttggcgctgcacgtgaaaaatacgca
cgtggtgtatctgtttcgattgatgaatctcagatagacgatcagtttttcgagcgtttc
agtaaaatactggagcctcaccgagcaggtagcgtacctgtgaatgtatactaccaacgt
tgtgatgcgcgagcgcggatcgccttggggacagaatggcgagtgacgccaagtgataca
ttattagacgaattaaaacagttgcttggtaagagccaggtagaactcgaatttaactaa
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