Vibrio sp. NTOU-M3: AB2S62_04670
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Entry
AB2S62_04670 CDS
T10494
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vio Vibrio sp. NTOU-M3
Pathway
vio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB2S62_04670 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vio03019
]
AB2S62_04670 (rne)
03009 Ribosome biogenesis [BR:
vio03009
]
AB2S62_04670 (rne)
Enzymes [BR:
vio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB2S62_04670 (rne)
Messenger RNA biogenesis [BR:
vio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB2S62_04670 (rne)
Ribosome biogenesis [BR:
vio03009
]
Prokaryotic type
rRNA processing factors
AB2S62_04670 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XDE87374
LinkDB
All DBs
Position
I:complement(1024728..1027640)
Genome browser
AA seq
970 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDANPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
LDHIRLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERTQEVKITVVPNSEMETP
HFDVIRVREGEEFDLLSYLLPKKLEALKEAEGKESPDVESKPKKIEEPALKGFAAPSQSA
PTPKPSKAKPVATKAQAEEQPGIISRLFKALSGFLFGSTETEEKKEERGQKEQNNRGNRN
NNRRNRNDQRRRNNRDNNRDRDNNRDKRKPAKDEQAQTQERKQQNRKPKQERRNKRDRDD
VKASKVAEEGLKLAADAQSKAPEARPEEKAAKVKERRQRRKLNKQVRVKNQAAQAEQEQS
AKVEQAQAIAETVEKETIATQAEETEQQPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFR
LRKGGVASPEMAMGKVMPRYDLPTKPVKKQAEKENVVDTTTVTVLGGFACPEMAMGKVII
RHETVAQKVEEQEVQSTTAETIVPVVESIAEPVEQAQPNAESEQKVVVATKAETPEVVAN
VVAPQSDIKVPLEVKGHASAPMAKAPGTTALKEIEVIAAPFRAERYQIRGAGSQVATNQA
GSAMAKPNSF
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgttgctttggttgat
ggccaaagactttacgatttggatatcgaaagtcctggtcacgaatcaaaaaaagcaaat
atctacaaaggacgtatcactcgcatcgaacctagtcttgaagcagctttcgtagactac
ggcgcagaaagacacggtttcctccctctaaaagaaattgctcgcgaatacttccccgaa
ggttacacctaccaaggccgtccaagcatcaaagaagtgttaactgaaggtcaggaagtt
attgtacaagtagagaaagaagaacgaggtagtaaaggtgcagccttaactacgtttatt
tctctagcgggtagttacctagtattaatgccaaataaccctcgtgctggcggaatttct
cgtcgtattgaaggtgatgaacgcactcaactaaaagcggcattgagcacacttgagctt
cctcaaggtatgggcctcattgtacgtactgcgggtgtaggcaaaagtgctgaagagttg
gaatgggacttaaacgttctattaaatcactggggagcgatcaaacaagcttctgatgct
aacccagcacctttccttattcaccaagaaagtaacgtcattgtgcgtgctattcgcgat
tatttgcgtcgtgatattggcgaaatactgatcgacagtaatacgatttatgaacgtgct
ctcgaccatattcgcctagtgcgcccagactttgtcaatcgagtgaaaaagtacgatggt
gaagtgccactatttagtcactaccagattgaaagccaaatcgagtctgccttccaacgt
gaagttcgtctcccttctggcggctctatcgttattgacccaacagaagctctcacatct
attgatatcaactctgcccgcgcgacaaaaggcggagatatcgaagaaacagcgctgaac
acaaaccttgaagctgctgacgaaattgcacgtcaattacgtcttcgtgatcttggtggt
ctcgtcgtgatcgactttatcgatatgacccctgttcgtcaccagcgtgaagtggaaaac
cgtctacgagatgcggttcgtatggaccgtgctcgtgttcaaattggacgtatttctcgc
tttggtttgctagaaatgtcacgccagcgcctgagcccttctcttgcagaagccagccac
catatctgtcctcgctgtaccggtactggtgttgttcgtgataacgaatcgcttgctctc
tctgttcttcgtttaatcgaagaagaggcattgaaagacaatacagctcaagtactcgct
gttgttcctgtcccaattgcttcctacctactcaacgaaaaacgtcgctcggttaaccat
attgaacgtacacaagaagtgaaaatcactgttgtgcccaattcagaaatggaaacaccg
catttcgatgtaattcgtgtacgtgaaggcgaagagttcgacctactttcttacctactg
ccgaaaaaacttgaagcgttgaaagaagcagaaggtaaagagtctccagacgttgaaagt
aaaccgaagaaaatcgaagagcctgctcttaaagggtttgccgcaccatcacaatcggca
ccgacaccaaaacctagcaaggccaaacctgttgcgacaaaagcgcaagctgaggagcaa
ccaggtattatttctcgtctgttcaaagctctaagcggcttcctatttggctcaaccgaa
actgaagagaagaaggaagagcgtggccaaaaagagcagaataatcgcggaaatcgcaat
aacaaccgccgtaaccgtaacgatcaacgtcgtcgcaataatcgtgacaataaccgagat
cgtgataacaatcgtgataagcgcaaaccggcgaaagacgagcaagctcaaactcaagag
cgcaagcaacaaaatcgcaagcctaaacaagaacgccgcaataaacgcgatcgtgacgat
gtgaaggcaagtaaagttgcagaagaaggtctaaagctagcggctgatgctcaaagcaaa
gcaccagaagctcgtccagaagaaaaagctgcgaaggtgaaagaacgtcgccaacgtcgc
aaactgaacaagcaggttcgtgttaaaaaccaagcggctcaagctgaacaagagcagtct
gctaaagttgaacaagctcaagctattgctgaaacagtggaaaaagaaaccattgcaacg
caagcagaagagactgagcaacaacctaagcagcgacgcaatcgccgttctccacgtcac
ctacgagcaagtggccaacgccgtcgtcgtggtcgcgatcgccgtccaaacccattccgc
cttcgcaaaggtggtgtagcatctccagagatggctatgggtaaggttatgcctcgttac
gacttaccgactaagccagtgaagaaacaggctgaaaaagaaaatgttgtagacactaca
acagtaactgtacttggcggatttgcatgccctgaaatggccatgggtaaggttattatc
agacatgaaaccgttgctcagaaagttgaagagcaagaagtgcagagcacgacagcagaa
acaatcgttcctgtcgttgaatcaatagctgaacctgttgagcaagctcagccaaatgct
gaaagtgagcagaaggttgtagtcgcgacaaaagcagaaactccagaagtggttgctaac
gttgttgcacctcaatctgacatcaaagtgccacttgaagtgaaaggtcatgcttcagct
ccaatggcgaaagctcctggtactacagcacttaaagaaattgaagttattgcagcacct
ttccgtgctgaacgctatcaaattcgcggtgcaggtagtcaagttgcaacgaaccaagct
ggttctgcaatggcaaaacctaacagcttttaa
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