Vibrio sp. NTOU-M3: AB2S62_05990
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Entry
AB2S62_05990 CDS
T10494
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vio Vibrio sp. NTOU-M3
Brite
Enzymes [BR:
vio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB2S62_05990 (hrpA)
Messenger RNA biogenesis [BR:
vio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB2S62_05990 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
XDE87957
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Position
I:1323755..1327591
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AA seq
1278 aa
AA seq
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MMRDRFRLSKRISGANKIKKDAARNAVFDEIALDIAKSMMVAEQRGSQQPTIEYPEILPV
SQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAARSVA
NRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLNQYDTIIIDEA
HERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSKHFNNAPIIEVSGRTYPVETR
YRPLSGDDDNDRDQLEGIFEAVDELCDEGLGDILIFMNGEREIRDTADALSKRNLKSTEI
VPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKV
QRLPIEPVSQASANQRKGRCGRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQM
TALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAINSDAKESKKRLTSIGRQLARLPIDP
RLARMVLESPKQGALKEVMIIAAALSIQDPRERPSDKQQSSDDKHKRFFHEDSDFLTFVN
LWNYIQKQQKALTGNQFRKQCKQDYLNYLRVREWQDVYFQIHQSMREMEFKLNDEPASYH
GVHSSILVGLLSHIGMKDQEKNEYQGARNARFHIFPASGLFKKQPKWIMSAELVETSKLW
GRIIAKIQPEWIEPLAKHLIKRSYSEPHWSKKRAAVMAHEKVMLYGVPIVPKRLVNYGSI
DPTVSRELFIRSALVEGEWETKHAFFKQNRKLLQEVEELEHKSRRRDILVDDDELFDFYD
QRVGTEVVSGKHFDTWWKKASKDNKELLNFEKEMLFKGDASHVTDLDYPNFWHQNNLKLK
LSYQFEPGDDSDGVTVHLPLPILNQVEPAGFDWQIPGLRHELVVSLIKSLPKTVRKNFVP
APNYADAFLARATPMEAPLLDSLEKELRRMTGVEVLREDWNMDQIPEHLKVTFRAVDHRN
RKLKENKDLHELKESLKDKVQETLSKVADDDIEQEGLHTWSFGELPKVYQQKRGGYDVKA
YPAIVDAKDSVEIKLYETEYEQVTAMQAGQRRLILLNVPSPIKYLHSNLPNKSKLGLYFN
PYGKVLDLIDDCIACGVDKLIEEQGGLVWEPEKFDALKEHVRAELGDTVVDIAQQVETIL
TTAFNINKKLKGKIDFTMAFALSDIKAQIEGLIFKGFATECGWKRLPDILRYMRAIERRM
EKLPIDPNKDRLHMLKVESVTSDYKELLNKIPKGMVIPENVKEIRWMIEELRVSFFAQQL
GTPYPVSDKRVKNAINEC
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtgaccgcttccgcttaagcaaacgtatttccggtgcgaacaaaattaagaaa
gacgcagcgcgtaacgctgtgttcgatgaaattgcgctggatattgccaaatctatgatg
gttgccgaacaacgtggtagccaacaaccaacgattgaatacccagaaatcctgccagta
agccagaaacgtgacgacattgccaaagcgatcgaagaaaaccaagtggttatcgttgcg
ggtgagactggttcaggtaaaaccactcagctgccaaaaatctgtgctgagctcggtcgt
ggtaagttcggtctgattggtcacactcagcctcgtcgtcttgcggcgcgctcggttgcc
aaccgtattgccgaagagatggaaaccaagcttggtgagtttgttggttacaaggttcga
tttaacgatcagatctctgaaaacactcaaatcaaattgatgacggacggtatcttgctg
gctgaaattcagcatgaccgtttcctgaatcaatacgacaccatcattatcgatgaagcg
cacgagcgcagccttaacatcgatttcatcttgggttacttgaaagagttgctgccacgt
cgtcctgatttgaaagtgatcatcacgtcggcaaccatcgaccctgagcgtttttcaaaa
cacttcaacaacgcaccaatcattgaagtgtcaggtcgtacttacccagtagaaacgcgt
taccgcccactaagtggtgatgacgataatgatcgtgaccaacttgaaggtatcttcgaa
gcggtagacgaactgtgcgatgaaggtttaggtgacattctgatcttcatgaacggtgag
cgtgaaatccgtgataccgctgatgcactgtctaaacgtaacttgaagagcacggaaatt
gtgccgctttacgcgcgtttgtcggcgggtgagcagaacaagattttccaacctcatgct
ggtcgccgcattgtactggcaaccaacgtagcggaaacctcgttgacggttccgggcatc
aaatacgttattgacccgggtacggcgcgaatcagccgatacagttaccgtactaaggtt
cagcgtcttccaatcgagccagtttctcaggcgagtgcgaaccagcgtaaaggtcgttgt
ggtcgtgtggaagagggtatctgtatccgtctgtactcagaggaagattttgagtcacgt
ccggagtttaccgatcctgagatcctgcgtaccaacctagcgtcggttatcttgcagatg
acggcacttggtttgggcgatattcaagccttcccgtttgtggaagcacctgacaaacgc
aacattcaagacggtgttcgccttctagaagagttaggtgcaatcaactctgatgcgaaa
gaatcgaagaaacgcctaactagcattggtcgtcaacttgcacgccttcctatcgaccca
cgtctagcacgtatggttttggaatcaccaaagcaaggcgcattgaaagaagtgatgatc
atcgcggcggcactgtcgattcaagacccgcgtgagcgtccaagtgacaagcagcaatca
tcagatgacaagcacaaacgtttcttccatgaagactcagattttctgacgtttgtgaac
ctgtggaactacatccagaagcagcaaaaagcgctgacgggcaaccagttccgcaagcaa
tgcaaacaagattacttgaactacttgcgcgtgcgtgagtggcaagatgtgtacttccaa
attcaccagtcgatgcgtgaaatggaattcaaactgaacgatgagcctgcgtcttaccat
ggcgtacacagctcaatcttggtcggtttgttgtcacacatcggtatgaaagatcaagag
aagaatgaataccaaggcgcgcgtaacgctcggttccatatcttccctgcatcaggtcta
ttcaagaaacagcctaagtggatcatgtctgctgagttggtggaaacctcaaaactttgg
ggtcgcatcattgctaagattcagcctgagtggattgaaccattagcgaagcacttgatt
aagcgcagctacagcgagccgcattggtcgaagaaacgtgcagcagtcatggcacacgag
aaagtgatgctttacggcgtgccaattgtaccgaagcgtttggtgaactacggcagtatc
gatccaaccgtcagtcgtgagctgttcattcgtagtgcgctggtggaaggtgagtgggaa
accaagcacgcgttcttcaagcaaaaccgtaagcttcttcaagaagtggaagagcttgaa
cacaaatctcgtcgccgtgacatcttggtggatgacgatgaactgtttgatttctacgac
caacgcgttggcactgaagtggtctctggcaaacacttcgatacatggtggaagaaagca
tcgaaagacaacaaagaactgctgaacttcgagaaagagatgctgttcaagggcgatgca
agccacgttaccgatttggattacccgaacttctggcatcaaaacaacctgaaacttaag
ctgagctaccagtttgagccgggtgatgacagtgacggtgtgacggtacacttgccgctg
ccgatcttgaaccaagtcgagcctgcgggttttgactggcagatcccaggtttacgccat
gagcttgtagtgagtttgattaaatcgttgccgaagacagtgcgtaagaactttgttcct
gcgccaaactacgctgatgctttcttagctcgtgcaacaccgatggaagcgccgctactg
gactcattagagaaagagctgcgtcgaatgacgggtgtagaagttctgcgcgaagattgg
aatatggatcaaattccggagcacttgaaggtgactttccgcgcggttgaccatagaaat
cgcaagttgaaggaaaacaaagaccttcacgaattgaaagagagtttgaaagacaaagtt
caagaaaccctttcaaaagttgcggatgacgacatcgagcaagaaggtctgcatacgtgg
agctttggcgaactacctaaggtataccaacaaaaacgcggtggttacgacgttaaggcg
tacccagcgattgtggatgccaaagacagtgttgaaatcaaactgtacgagaccgaatac
gaacaggtcacggcaatgcaagcgggtcagcgtcgtctgatcttgttgaacgtgccgtcg
ccaattaaatacctgcactctaacttaccgaataagtcgaagctgggtctgtactttaac
ccttacggtaaagtattggatctgattgatgactgtatcgcgtgtggtgtcgataagctt
atcgaagagcagggcggtttggtttgggagccagagaagtttgacgcactgaaagaacac
gttcgtgctgagcttggtgatacggtggtggacattgcacagcaagtggaaaccatcctg
acgaccgctttcaatatcaataagaagttgaaaggcaagatcgatttcaccatggcgttc
gcattatcggacatcaaagcacaaatcgaaggattgatcttcaaaggcttcgcgacagag
tgtggctggaaacgcctgccagatattctgcgttacatgcgtgcgattgagcgtcgtatg
gagaagctgccgatcgatccaaacaaagaccgtttgcacatgctgaaagtggaatctgtt
acgagcgactacaaagagctgctcaacaaaattccgaaaggtatggtgattccagagaac
gtgaaagagatccgttggatgatcgaagagcttcgagtgagcttctttgctcaacaattg
ggcacgccgtatccggtttctgataaacgagtcaaaaatgcgattaacgaatgttaa
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