Vibrio sp. NTOU-M3: AB2S62_12110
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Entry
AB2S62_12110 CDS
T10494
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
vio Vibrio sp. NTOU-M3
Brite
KEGG Orthology (KO) [BR:
vio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vio03019
]
AB2S62_12110 (hrpB)
Enzymes [BR:
vio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB2S62_12110 (hrpB)
Messenger RNA biogenesis [BR:
vio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB2S62_12110 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XDE86060
LinkDB
All DBs
Position
I:complement(2757307..2759766)
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AA seq
819 aa
AA seq
DB search
MSQLPIEAVMPDLLAGLASHDQLILKAAPGAGKSTFFPLQLLRQNRITGKILMLEPRRLA
ARNIARYLAEQLGESVGETVGYRVRGDNRVSSQTKLEIVTEGIMTRMLQTDPELHGVGLV
IFDEFHERSLHADTALAFVLEVQQALREDLKLVVMSATLDHSALIGLLPDAIYIESQGRS
FPVEQRYCPLRPNENLLPALAKQVVNLLHSETGSMLVFLPGVGAIKRLAEQLQVVDDTVD
ICPLYGQLSIKDQQKAIAPAMPGRRKVVLATNIAETSLTIEGIRIVVDSGLERVAKFDLK
SGITRLEETRIAQSSAVQRAGRAGRLEAGICIRIYSESQLNQQPLVPQPEVIRSDLSNLA
LELAQWGCKDAAELQWLDLPPYAALNQARDLFRMLGLMDEQYQLTSLGQQAHALGIEPRL
AAMLVKSRHHSWLNTAIAVAALLEEPEKNQTDFSVVLHRLKQGNHSRNKFVLQRIQALAA
KFQCHFSLESIEETLLGPILCLAFPDRIAGQRHHQPGRYLLANGHGAMLKHDDVLVDEPY
LVCAELMRSQTDASTIYLAARLDIVELEQRLPELFSEMETVDWDDKKGRLIAEKRVQIAH
LLIQRTALPAPSGEKMTEALLNYVRRKGLAVLHWNTAALSLLERIRCGSDWLNEEAWPAM
DEQSLLDTIDEWLLPYMVGVSSVKAMQQLDLCEALLARLGWPLNQQLDEWLPSYYTLPTG
SKKQIRYQQGESPVLSVRMQEIFGERSSPVIAKGRQKVVLELLSPAQRPLQVTRDLASFW
QGAYKEVQKEMKGRYPKHVWPDDPANHVATTKTKRQLNQ
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagttgcctattgaagccgtgatgccagatctgctggcaggcttagccagtcat
gatcaacttattttaaaagccgctcccggagcgggtaagtcgactttcttcccgctgcaa
ctgttgcgccaaaatcgtatcaccggaaagattttgatgttggagccgcgtcgactcgct
gctcgcaatattgctcgttatttagctgagcaacttggtgagtccgtcggcgagacggtc
ggttaccgagttagaggtgacaatcgagtttcatcacagacgaaattggaaatagtgacc
gaagggatcatgacccgcatgttgcaaacggatcccgaacttcatggtgtgggtttggtg
atttttgatgaatttcatgagcgcagtttacatgccgataccgctttggctttcgtgctg
gaagtacaacaagcattgcgagaagatctgaaactggtggtgatgtcagccacgctggat
cacagtgcgctcatcggattgttgccagacgctatttatattgaatctcaaggccgctca
tttccggttgagcagcgttattgtccattacggccgaatgaaaacttgctccctgccttg
gcgaaacaagttgttaatctactccactctgaaacagggtctatgctggtatttttgccc
ggcgttggtgcgattaaacggctagccgagcaattacaagtggtggatgatactgtcgat
atctgcccgttgtatgggcaacttagcatcaaggatcaacaaaaagcgatagcgccggcg
atgcctggtaggcgcaaagtggttttggcaaccaatattgcggaaacatccctaaccatc
gaaggcattcgtattgtggtcgattcagggcttgaacgagtggctaaatttgatttgaaa
agtggtatcactcgcttagaagaaacgcgcattgcgcaatcttctgcggtgcaacgagcg
gggcgtgctgggcgactggaagcgggcatatgtattcgcatctatagtgagagccagttg
aatcaacagcctttggttcctcaaccggaagtcattcgctccgatctatctaaccttgcg
ctggagttagcacaatggggatgcaaagatgccgcagagttacaatggttagatttgccg
ccttacgctgcattaaatcaggctcgtgacttatttcgaatgcttggcttaatggatgag
caatatcagctcacatcgttaggtcagcaagcacatgcgttggggatcgagccgaggttg
gctgcaatgctagtaaaatctcggcatcattcttggttgaacactgcgattgctgtggct
gcattgcttgaagagccggagaaaaatcagacggatttttcagttgtgttgcatcgctta
aaacaaggtaatcacagccgcaacaagtttgttttgcaacgaattcaagcattagccgct
aagtttcagtgccatttttcgcttgaaagtatcgaagaaactttgctgggtcctattctg
tgtttggctttcccggaccgcattgccgggcaaaggcatcatcaacctggacggtactta
ttggccaatggtcatggtgcgatgttaaaacatgatgatgttttggtggatgagccttat
ttagtatgtgctgagcttatgcgtagccaaacggatgccagtacaatttatcttgctgca
agactcgacattgttgaactagaacaaagacttccagaattattctcagaaatggaaacg
gttgactgggatgataaaaaaggccgattaattgcagaaaagcgtgttcagatcgcgcac
ttactgattcagcgaacggcactacctgcaccaagcggggaaaaaatgaccgaagcttta
cttaactatgttcgtcgtaaaggactcgctgtattacattggaatacagctgcgcttagc
ttattggagcgcattcgttgtggcagtgattggttaaatgaagaagcttggcccgcgatg
gacgagcaaagcttactcgatacgattgatgaatggctattgccatacatggtcggtgtg
agttctgtgaaagcaatgcagcagttggatctttgcgaagcattgttagcacgtctcggg
tggccattaaatcagcagttggatgaatggttaccaagttattacacgttacccacgggt
tcaaaaaaacagatccgctatcaacaaggcgagtctcccgtactatctgttcgaatgcag
gagatttttggcgaacgatcgtcgccagttatcgcaaaaggacggcaaaaagtagtgctg
gagcttctgtctccagcgcaacgccctttgcaggttactcgtgatctcgccagtttctgg
cagggtgcctataaagaagttcagaaagaaatgaaaggacgctatcccaaacatgtctgg
cctgacgatccagccaaccatgtcgcgaccaccaaaaccaaacgacaattaaatcaatga
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integrated database retrieval system
