Vibrio sp. NTOU-M3: AB2S62_15100
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Entry
AB2S62_15100 CDS
T10494
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vio Vibrio sp. NTOU-M3
Pathway
vio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB2S62_15100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vio03019
]
AB2S62_15100
Enzymes [BR:
vio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB2S62_15100
Messenger RNA biogenesis [BR:
vio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB2S62_15100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Helicase_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
XDE88734
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All DBs
Position
II:complement(829211..830470)
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AA seq
419 aa
AA seq
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MSQQFAQLGLADSLLSTLSELGFQQPTEIQQQAIPFVLDGKDILAGAQTGTGKTAAFGLP
ILQKLLASKSVRDEQSADVRALVLVPTRELAQQVFDNLTSYAKATDIKIVTAYGGTSMNV
QTKNLRGGADILIATPGRLLDHLFCKNIFLSKTEFLVFDEADRMLDMGFMPDIQRILKRM
GESYQTLFFSATFDKRIKSIAYKLLNDPVEVQVTPSNSTAETVKQIIYPVDKKRKAELLA
YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKAGKIR
ALIATDVAARGLDIHQLEQVVNFDMPFKAEDYVHRIGRTGRAGKEGMAVSLMSHDEEYLL
EAIERLLDNRLPQEWLQGFEPSLIEDIEPDKAPRRKGRSSDKRKMKAKLKIHAGRGKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaattcgctcaactaggtcttgccgattctctgcttagtacgttatcagag
cttggttttcaacagccaacggaaatacagcaacaagcaattccttttgtacttgatggg
aaagatatcttagctggagctcaaacaggaacagggaaaacggcagcgtttggcttgccg
attcttcaaaaactattggcatcaaaaagtgttcgggatgaacaaagtgcagacgttcgt
gcattggttttagtaccaacacgcgagctggcacagcaggtgtttgataacctgacaagt
tatgccaaagccacagatattaaaattgtgaccgcctacggtggtaccagtatgaatgtg
caaaccaaaaacttgcgaggtggggcggatattcttattgcgaccccaggtcgtcttttg
gatcatttattctgtaagaacatctttttatctaaaactgaatttttagtatttgatgaa
gccgaccgtatgttggatatgggctttatgccagacatccaaagaattcttaagcgaatg
ggcgagagctaccaaacgctgtttttctccgccacttttgataaacgtataaaaagtatt
gcttataagctgctaaatgatccagttgaagttcaggtgacgccatcgaacagtacagct
gaaactgttaagcaaattatctatccagtggataaaaaacgaaaagctgaactactcgcg
tatctgataggttctcgcaattggcagcaggtattggtatttaccaaaaccaaacaaggc
agtgatgcgttggctaaagagttgaagctagacggaattaaggctgcttcaattaacggt
gataaaagccaaggtgcacgccagaaagcattagatgattttaaagcaggaaaaattcgc
gcattaatcgcaactgatgttgctgcaagagggctagatatccatcagcttgaacaagtc
gtgaactttgacatgccatttaaagctgaagattacgtacaccggattgggcgtacgggg
cgggctggaaaagagggcatggccgtttctttgatgagccatgatgaagagtatctatta
gaggcgattgagcgcttgttagataaccgactgcctcaagagtggttacaagggttcgaa
ccaagtttgattgaagacattgaaccggataaagctccaagaagaaaaggccgctcatcg
gacaaaaggaagatgaaagcgaagttgaaaattcatgcaggacgtggaaagaaaaaataa
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