Vibrio sp. NTOU-M3: AB2S62_20280
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Entry
AB2S62_20280 CDS
T10494
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vio Vibrio sp. NTOU-M3
Brite
KEGG Orthology (KO) [BR:
vio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vio03016
]
AB2S62_20280 (rnb)
Enzymes [BR:
vio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB2S62_20280 (rnb)
Transfer RNA biogenesis [BR:
vio03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AB2S62_20280 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XDE88373
LinkDB
All DBs
Position
II:387971..389974
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AA seq
667 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDNKTSFFIPPPYMKKCIHGDKV
VAIIRTENEREVAEPQELLEQSMTRFIGRIKLFKGKLNVVPDHPLLKKLSLKAKVTKGLK
TDDFAEGDWVVANLTRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAENDLPNSEPAGI
DNWALIDDVDLERVDMTHVPFVTIDGESTKDMDDALYAKKLDDGSFDLTIAIADPTAYIT
PDSDMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENEVRPALCCTVNVDKDGVIGD
DIKFFAANIKSHARLVYDHVSDWLENGKSENWEPSEAIGEIVRDLYEFSLARANWREIHA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEESMITANICAGKTLQSSFNSGVFNT
HAGFKPEKIEDVVALVNPEGDLPFTAESVATLDGFAALRRWLASQETSYLDNRIRKAQAY
SEIGNQPLPHYAMGLELYATWTSPIRKYGDMINHRMLKAHILGKEPVQTADESVGEELAI
HRKHHKIAERNVGDWLYARTLADAPAKETKFTGEIFDISRAGARVRLVENGAAAFIPSSV
IVDNKERIESNGESGTISIDKELVYRLGDTLEVVLIEVNQETRSLVAKPTQVFSEPQPTD
SKENAAA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgttactcgctcagctaaagcaacagattcaagaaaaccttcct
aaaaaagaagggacaatcaaagcgactgaaaaaggctttggtttcttagaagtcgacaat
aaaaccagtttcttcattccaccaccgtacatgaaaaaatgcattcatggcgataaagtc
gtggcgatcatcagaaccgaaaatgaacgtgaagtggcggaacctcaagagcttttagag
caaagcatgacgcgttttattggtcgcatcaaattatttaagggcaagttgaatgttgtg
ccagaccatccgctactgaaaaagttatcgctaaaagccaaagtaacgaaagggcttaaa
acggatgattttgctgaaggtgattgggtcgttgccaatttaactcgtcatccattgaaa
ggtgacaatggtttctttgttgagatctcggaaaaaattaccgatgcagacgacaaaatt
gcaccttggtgggtaacgttagctgagaacgacttgccaaacagtgagcctgctggcatc
gataactgggcgctaatagatgatgtggatctagagcgcgttgatatgacgcacgttcct
tttgtcactatcgatggcgaatcgaccaaagatatggatgatgcgctgtatgcgaagaag
ctagatgacggtagttttgacctgacgattgctatcgctgacccaacggcatacatcact
ccggacagtgatatggataaggttgcgagagaacgtggttttaccatttacctaccaggt
cgcaacatccctatgctgccgcgcgatcttgctgatgagctatgttcgttgatggagaac
gaagtccgtcctgcgctatgttgcacagtgaacgtcgataaagatggtgtgattggtgat
gacataaaattcttcgctgcgaatatcaagtctcatgcgcgcttggtatatgatcatgtc
tctgattggttagaaaatggcaaatcagaaaactgggaaccaagtgaagcgattggcgaa
attgttcgtgacttgtatgaattctccctagctcgagcaaactggcgtgaaatacatgcc
gtggtattcccagatcgtcctgattatcgattcgaacttagtgaagacaatgatgtggtt
gcgattcatgcagacatgcgccgcagtgcaaaccgtttggtggaagagtcgatgatcacc
gccaatatttgtgcgggtaaaacacttcaatcgagctttaactctggtgtgtttaatacc
cacgcagggttcaaacctgaaaagattgaagatgtagtagcacttgtgaacccagaaggt
gatttgccattcactgctgaatccgttgcgactcttgacggctttgctgcgcttcgtcgt
tggttagcgagtcaagaaacatcttatttagataaccgtattcgtaaagcgcaagcatac
agcgaaattggtaatcagccgctgccgcattacgctatgggcttagagctatacgcgaca
tggacatcaccaattcgtaaatacggcgacatgatcaaccaccgtatgttaaaggcacat
atcttaggtaaagagcctgttcagactgctgatgagtcggtgggtgaagagcttgctatc
caccgtaaacatcacaaaattgccgagcgcaatgtaggcgattggttgtatgcgcgcacg
ttagcggatgcgccagcgaaagaaacgaagtttacaggtgaaattttcgatatttcacgc
gcaggggctcgtgttcgtttagtggagaacggcgcggcagcatttattccaagttcagtg
attgttgataacaaagaacgtatcgaatcgaatggtgaaagcggaacgatttcgattgat
aaagagttggtttatcgattgggtgacacgctagaggtggttcttattgaagtgaaccaa
gaaactcggagtttggtggctaagccaacacaggttttctctgagcctcaacctacggac
tcgaaagaaaacgcggcagcataa
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