Vibrio sp. sp1: H9L11_02620
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Entry
H9L11_02620 CDS
T11103
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
vip Vibrio sp. sp1
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vip01011
]
H9L11_02620
Enzymes [BR:
vip01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
H9L11_02620
Peptidoglycan biosynthesis and degradation proteins [BR:
vip01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
H9L11_02620
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM2_CERK1_LYK3_4_5
LysM1_NFP_LYK
LysM3_NFP
T2SS-T3SS_pil_N
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
QRZ23056
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Position
1:555639..557222
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AA seq
527 aa
AA seq
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MRLKYTWALALLLSGCQLTQSDSTSSTPETNKSEQTAKQNAVKAQPGNKSSLAKKSANDA
PKVLSPQEQEDVWQRIAMQLDMDIPNHKKVDYYRTWYLKHPNHLYTVSKRATPFLYMITK
RIEERGLPMELALLPVVESSFDAFAYSHGSAAGLWQFVPGTGKMMGLEQNYWYDGRRDVA
AATDAALDYLVQLNERFDGNWEHAIAAYNSGGGRVSSAIRKNKKLGKPIDFFSLDLPKET
SSYVPKLLALADVIANQDKYGLNIPAIPNKPVLTLVDPEEQLDLAIAADYAGISVKELQS
YNPAYNQWSTAPEGPHQLLIPVEKKETFLTKVEKNRGKGMKVARYKVKSGDSLSVLANKY
GTTTKVIRRANGLSNNNIRIGQYLLIPTSTKDDAKYALTAQNRLNKTQSRARGQLKLTHV
VQSGESLWSIARNNKVSYKSLAKWNGMSPKDPLRVGQKLVIWKDSDKGSVIRTVFYNVRS
GDTISGIASKFKVKTNDIVKWNSLHKKKYLQPGQKLKLYVDVTKVSV
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgaagtatacttgggcgttggcgttgttattatctggctgtcaattgactcag
tcagattcaacgtcttctacaccagaaaccaataaatctgagcagactgcaaagcaaaat
gcagtaaaagctcaaccgggcaataaatcgtcactagcaaaaaaatccgctaacgacgcg
cctaaagttctctccccccaagaacaagaagatgtgtggcaacgtatcgccatgcagctg
gacatggatatcccaaaccacaagaaagtggactactaccgtacgtggtatttaaagcac
ccaaatcacctttacacggtatctaagcgtgcgactccttttctatacatgatcacaaaa
cgtatcgaagagcgcggactcccaatggagcttgcattacttcctgtagtggaaagttca
ttcgatgcctttgcctactcacatggtagcgcggctgggttgtggcaatttgtcccaggc
accggaaaaatgatgggattagagcaaaactactggtatgacggtcgcagagatgtggca
gcagcaacggatgcagcgctggactacctagtacaactaaacgagcgttttgatggtaac
tgggaacatgcaatcgccgcttataacagcggtggaggccgagtttctagcgcaattcgt
aagaataaaaagctcggtaaacctatcgatttcttctcattagacttaccaaaagagacc
agcagttacgttcctaagctattggccttggctgacgttatcgcaaaccaagacaagtac
ggacttaatattcctgcaattccaaacaagcctgttctaacgcttgttgatccagaagag
cagttagatctggctattgccgcagattatgccggcattagcgtaaaagagttgcagagt
tacaacccagcatacaaccagtggtcgacagcgcctgaggggccgcaccaacttttgatt
cccgtagagaaaaaagagacttttctcaccaaggtggagaaaaatcgcggtaaagggatg
aaggtcgctcgctacaaggtgaaatctggcgactctttaagcgtgctagctaataaatac
ggcacaaccacgaaagtcattcgacgtgccaacggcctatcgaataacaatattcgtatt
ggtcaatacctgttgattccgacatcaacaaaagacgatgcaaaatacgcattaacggca
caaaaccgattaaacaagactcaatctcgtgctcgtggtcaactcaagctcacccatgtc
gttcagtctggagaaagtttgtggtcaatcgcacgtaacaataaagtgtcgtataaatcg
ttagctaaatggaatggtatgagccctaaagatccattgcgtgtgggtcaaaagctagtg
atatggaaggactcagacaaaggttctgtgatccgtaccgttttctacaacgttcgctct
ggcgacaccattagcggcattgcaagcaagttcaaagtaaaaacaaacgacatcgtgaaa
tggaactcgctacacaagaaaaaatacttacaaccaggtcaaaagcttaagttgtacgtt
gacgtaacgaaggtaagtgtatga
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