Vibrio sp. sp1: H9L11_03050
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Entry
H9L11_03050 CDS
T11103
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vip Vibrio sp. sp1
Pathway
vip03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
H9L11_03050 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vip03400
]
H9L11_03050 (recD)
Enzymes [BR:
vip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
H9L11_03050 (recD)
DNA repair and recombination proteins [BR:
vip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
H9L11_03050 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
NAT10_TcmA_helicase
AAA_11
SLFN-g3_helicase
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
nSTAND3
UvrD_C
DEAD
CbiA
AAA_28
MukB
ResIII
TrwB_AAD_bind
T2SSE
YrbL-PhoP_reg
AAA_7
DUF87
NTPase_1
SRP54
RNA_helicase
AAA
Motif
Other DBs
NCBI-ProteinID:
QRZ23139
LinkDB
All DBs
Position
1:complement(641207..643354)
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AA seq
715 aa
AA seq
DB search
MTTNRNLHSDQDSLLVVLERLAHKGAIRQLDYQFACFIDSQTHDEQSDSQALAFIAGVVS
SELGKGHICLSLFDAQGQSTDLASKLGLFGESALALNTQLQGIDWIQVLQNSSLVGAQGE
ALPLMFDGERLYLHRYWHYEVTLAEKLNQLGAAVNLQPQEFARLSKLLNHLFARQYHFLF
NALGKAVEAGSSNQVLRQQLVCDHLDVVASESLDWHAIDSVLSNARKVQDLQTLDELVPL
SACVNWQKIAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNLTIKLVAPTG
KAAARLTESIGKAVQELPVSPELKAKIPTESSTLHRLLGAIPNSAEFRHNKQNPLHLDIL
VIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFHALGYGKEQA
SAIAKLTGFDTLAHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSGSAASVDNVW
ARDFSDIEHFALSSQHYNQMMQTLVQEYGRYLKRIGQQETDPETGEPESLTRKAKAVLDT
FNQCRLLCAIREGDFGVAGLNQRIEKALAARKFIQVQDEIWYHGRPVMVTRNDHGLGLYN
GDIGICMRDDSEEEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHKSQGSEFDYTLM
ILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTTRASGLVQRLTN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaaatcgcaatcttcattctgaccaagatagtctattggtagtgctggaacgc
ttggcgcacaaaggtgctattcgtcagctcgactaccaattcgcctgttttattgattct
caaacgcatgatgaacagtcggatagccaagcactggcgtttatcgcgggtgttgtcagt
agtgagctcggcaaaggacatatctgtctgtctctgttcgatgcacaagggcaatctacg
gatttagccagtaagctagggctgtttggtgagtcggcattggcgctcaatacacagttg
caaggcatagattggattcaagtattacaaaattccagcttggtcggcgcgcaaggagaa
gccttaccgctgatgttcgatggcgagcgtctgtatctgcaccgctattggcattatgaa
gtgacactggcggaaaagctcaatcagttgggcgccgcagttaacttgcaaccacaagag
tttgcgcgattatccaagttgctcaaccatttatttgcacgccaataccattttctgttt
aacgcgttaggcaaagcagtagaagcgggaagcagcaaccaagtgttgcgtcaacaattg
gtgtgtgaccaccttgatgtggtcgcaagcgaatcgttggattggcacgccattgattcc
gtgcttagcaatgcgcgcaaggttcaggatttacaaacactggatgaactcgtgccactc
tcggcttgcgtgaactggcaaaaaattgcggcggcagttgcgttaacccgtcgatttgct
gtgatttctggtggcccaggtacgggtaaaacgacgacagtaaccaaattgcttgctgct
ttgattgaacaggcaacgcacgagaaaaatctgaccattaagctggtggccccgacgggg
aaagcggcggcgcgattaaccgagtccattggtaaagcagtgcaagaactgccagtttct
ccggagctaaaagccaaaattccgactgaatcgagtaccttacataggttgctgggcgcg
attcctaatagcgcagaatttcgtcacaacaagcaaaatccactgcatttggatattttg
gttatcgatgaagcgtcgatggtcgatttgccaatgatgtataaagtggtcgatgcctta
ccgaaacatgcgcggctgattttgctaggtgataaagatcaacttgcttcagttgaagca
ggggccgtgttgggtgatatctgttcgttccacgcattgggttatggaaaagagcaggcg
tcagccattgcaaaactgacggggttcgatactttagcccatacgggtaacagtgcatct
agcattgccgatagtttatgtatgctgcaaaagagttaccgatttgacgctcgctcaggc
attggtcagttggcaaaagcggttaactcaggttctgcagcgagcgtagataacgtctgg
gcgcgtgacttttctgatatcgaacatttcgcgctaagtagtcagcactacaaccaaatg
atgcagacgttggtgcaggaatacggtcgttacctcaaacgcattggacaacaggaaacc
gatcctgaaaccggagagccagagtcgctaacgcgtaaagccaaagcggtattagatacc
ttcaaccaatgccgactgctttgcgcgattcgtgaaggtgactttggtgttgctgggcta
aaccagcgcatcgagaaagcgctcgcggcgcgcaagttcattcaggtgcaggatgaaatt
tggtatcacggtagacctgtcatggttacgcgtaatgatcatggtctaggtttgtataac
ggtgatattggtatttgcatgcgagatgacagtgaagaagaaccgcgtttgaaagtcttt
ttcgagttacctgacggcagtgtgaaatcggtcttgccaagccgagtgcctgaacatgaa
acggcttacgccatgaccatccataaatcgcaaggcagtgaatttgattacaccctgatg
attttgccaccagactttagcccgatattaactcgtgagttgatttacacaggcattacc
cgcgcgaaaaagcgtttagctctttacgccgaactcaacgttctgaagcgaggtattaag
gtgaaaacgactcgcgcgagtgggttagtacagcggcttactaactga
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