Vibrio sp. sp1: H9L11_03330
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Entry
H9L11_03330 CDS
T11103
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vip Vibrio sp. sp1
Pathway
vip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L11_03330 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vip03019
]
H9L11_03330 (pnp)
03016 Transfer RNA biogenesis [BR:
vip03016
]
H9L11_03330 (pnp)
Enzymes [BR:
vip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H9L11_03330 (pnp)
Messenger RNA biogenesis [BR:
vip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H9L11_03330 (pnp)
Transfer RNA biogenesis [BR:
vip03016
]
Prokaryotic type
tRNA degradation factors
H9L11_03330 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
DUF3016
KH-I_KHDC4-BBP
S1_RRP5
KH_SLS1_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
QRZ23191
LinkDB
All DBs
Position
1:complement(710587..712722)
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS
VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELETSKLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVAIQAINEFKAEVATPAWDWVAPEEN
TALKNKIADLAEAKLVEAYQITEKMARYDRIHEIAAEVNEVLLAEDPEADTKEIHTIFHD
LEKTVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGTAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAAAEAPAAKDE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacagttactttagaa
actggcgttattgcacgtcaagctacagcagcagttatggtcacaatggatgatacgtct
gtattcgtatctgttgtaggtaaaaaagaagccgttgcaggtcaagacttcttcccacta
acggttaactaccaagagcgtacttacgctgcgggtaaaatcccaggcggcttcttcaaa
cgtgaaggtcgtccttctgaaggcgaaacgctaacagctcgtctaatcgaccgtccaatc
cgtccgctattcccagacgcgtttaaaaacgaagttcaggttatcgcgacagtaatgtct
gtaaacccagatgttcagccagatatcgttacaatgatcggtacttctgctgctcttgct
atctctggcattccattcaacggccctatcggtgcggcgcgtgttggtcatatcgatggt
cagcttgtacttaaccctagccaaactgaactagaaacttctaagcttgaccttgttgtt
gcaggtacagagtcagcagtactgatggttgagtcagaagcggacaacctaactgaagaa
gaaatgctagcggcggttgtttatggtcatgaccaacaacaagttgctattcaagctatc
aacgaattcaaagcagaagttgcaactcctgcttgggattgggttgctcctgaagagaac
acagcgcttaaaaataagattgctgatctagcagaagctaaacttgttgaagcttaccaa
attactgagaaaatggctcgttacgaccgcatccatgagatcgctgcggaagtaaatgaa
gttcttcttgctgaagatcctgaagcagacacaaaagaaatccacactatcttccatgat
ctagagaagacagtagtacgtagccgtattattgcaggtaaccctcgtatcgatggccgt
gaaaaagacatggttcgtgcactagatgtacgtactggtgttcttcctcgtactcacggt
agcgcgctattcactcgtggtgaaactcaggcgatcgttactgcaacgctaggtactcag
cgtgatgctcaaatcatcgatgagctaactggtgagcgtaaagatcacttcctactgcac
tacaacttccctccatactgtgtaggtgaaactggttttgtaggttctcctaagcgtcgt
gaaatcggccacggtaaactggcgaagcgtggtattgctgcagtaatgccttctgttgat
gagttcccatacacagtacgtgttgtatcggaaatcactgaatctaacggttcatcttca
atggcttcagtatgtggtacttctcttgcacttatggacgcaggtgtgccaatcaaagca
tctgttgctggtatcgcaatgggtcttgttaaagaaggtgacgatttcgttgtactttct
gacatccttggcgatgaagaccacctaggtgacatggactttaaagtagcaggtactaac
actggtatcactgcacttcaaatggacatcaagatcgaaggcatcactaaagaaatcatg
caaattgcgcttaaccaagctcaaggcgcacgtaagcacatcctatctgtaatggatgaa
gcaatctctggtgctcgtgaagacatctctgaatttgctccgcgtattcacacgatgaag
atcagcgctgagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagactggtacaactatcgaaatcgaagacgacggtactatcaagattgcggca
actgaaggcactgctgcgaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagtgggccgtatctacacaggtaaagttgcacgtctagcagacttcggtgcattcgta
acggttcttccaggcaaagatggtcttgtacacatttctcaaatcgcagaaaaacgcgta
gagaaagtgtctgactacctagctgaaggtcaagaagttcaagttaaagttcttgaaatc
gaccgccaaggccgtgtacgtctaagcatgaaagaagcggtagaaaagccagctgaagaa
gctgctgctgaagcaccagctgctaaagacgagtaa
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