Vibrio sp. sp1: H9L11_03585
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Entry
H9L11_03585 CDS
T11103
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vip Vibrio sp. sp1
Pathway
vip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L11_03585 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vip03019
]
H9L11_03585 (pcnB)
Enzymes [BR:
vip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
H9L11_03585 (pcnB)
Messenger RNA biogenesis [BR:
vip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H9L11_03585 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QRZ23239
LinkDB
All DBs
Position
1:780270..781637
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AA seq
455 aa
AA seq
DB search
MHMNTNDYTPSEPATIPELALNVITREEHNISRKQISDNALKVLYRLNGAGFDAFLVGGG
VRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQ
EQKNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIEDLED
RLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEE
SLKLLQSGHGLETYHLLREYNLFQQLFPTIAAHFTEDYSSHTEQMLDLVLDSTDMRIEDG
KRINPAFMFAAMLWYPLCAKADELMEERNLGHYDAIMEASNIILDEQVRTIAIPRRHTAT
IREIWQLQLRLPRRNGKRAFRLMELNKFRAGFDFLEMRGEIEGGDTQKLAKWWETFQNAG
REMRQAMAADLDGQSPKTGQRRRKTYRKKKSKPKS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcacatgaatacaaacgactatacaccaagcgaacctgccacaattccagagctcgct
ctcaatgtaataactcgtgaagagcacaacatttcgcgtaagcagatcagtgataatgcg
ctgaaggtactgtaccgcctaaatggtgctggtttcgatgcttttcttgtgggtggcggg
gttcgagacttactgcttggacaaaaaccaaaagattttgacattgcgaccaacgcaacg
ccggaacagatcaaacagctatttcgtaactgccgtttgattggtcgccgcttccgcttg
gctcatattatgtttggccgagacatcattgaggttgcgacattccgtggtcaccaccaa
gagcaaaagaataagagcatttctcagcaatcaaaagagggtatgctgctgcgtgacaac
gtctacggcaccatcgatgaagatgctgagcgccgtgatttcacgattaactcgatgtac
tacaacatcgcagattactcgattcacgactacgcacgtggtattgaagatttagaagat
cgcctaattcgacttattggtgatccagaaacacgctaccgtgaagaccctgtgcgcatg
ctgcgtgcggttcgtttcgcggtaaaactagactttgatattgaagaagacaccgcagcg
ccaatcgaacacatggcaccgttgctcggtgacattccgtcagcgcgtctttttgaagag
tcactcaaattattgcaatccggtcatggcttagaaacctaccacctactgcgtgagtac
aacctattccagcaactattcccgacgattgcagcgcactttacagaagattactcctct
cacactgagcagatgttggatcttgtcctagattctaccgacatgcgcatcgaagatggg
aaacgcatcaatccagcatttatgtttgctgcaatgctgtggtacccactgtgtgcgaaa
gccgatgaactgatggaagagcgcaacttaggccattacgacgccattatggaagcgagc
aacatcattcttgacgagcaagttcgcacaattgccattccaagacgccacaccgcaacc
attcgcgagatttggcagttacagcttcgtcttccacgacgtaacggtaaacgtgcattc
cgtcttatggagctcaataaatttagagctggctttgattttcttgaaatgcgcggtgaa
attgaaggtggtgacactcagaagcttgccaagtggtgggaaacttttcaaaatgcaggc
cgagaaatgcgtcaagcaatggctgccgacttagacggtcaatcaccgaaaacaggccag
cgccgccgtaaaacttatcgcaagaaaaagagtaagcccaaatcatga
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