Vibrio sp. sp1: H9L11_04590
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Entry
H9L11_04590 CDS
T11103
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vip Vibrio sp. sp1
Pathway
vip02020
Two-component system
vip02040
Flagellar assembly
vip05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H9L11_04590
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
H9L11_04590
09142 Cell motility
02040 Flagellar assembly
H9L11_04590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vip03021
]
H9L11_04590
Transcription machinery [BR:
vip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H9L11_04590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
IPPT
Motif
Other DBs
NCBI-ProteinID:
QRZ23402
LinkDB
All DBs
Position
1:964948..966417
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AA seq
489 aa
AA seq
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MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGQDEPLANG
EDKSAVEAADSNSASEPTEIDVPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALD
DDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIALAIIDAVDDYGYLTLSPEEIHESFD
NEEIELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLTTFPEDTPWLAEAKMILADHIDH
LGNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDNGKWT
VSINPDSVPKLKVNQQYAQLGKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIV
EHQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVS
TDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIA
PSSQRKRLL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcattacaactcaagctaggtcagcagttagccatgacgccacagttgcag
caagcgattcgcttattgcaattgtcgacactcgatcttcaacaagaaatccaagaagcg
ttggactcaaacccattattggaagttgaagaaggccaagacgagcctctagcaaacggt
gaagataagtcagcggtcgaggctgctgatagcaacagtgctagcgaaccaacagaaatt
gacgttccagatagctccgatgtgatagagaaatcagaaattagctctgaacttgaaatc
gacacgacttgggatgacgtctacagcgcgaatactggtagcactggcttagctcttgat
gatgatatgcccgtctaccaaggcgaaaccactgaatcattacatgattacctcatgtgg
cagcttgacctaacaccattcagtgaaaccgaccgcacgattgcattagcgattattgac
gctgttgacgactacggctatttaactttgtcgcctgaagagattcatgagagcttcgat
aatgaagagatagagttagacgaagtagaagccgttcgtaaacgcattcaacaattcgat
cctcttggcgttgcatcgcgtaacttacaagaatgtttgttactgcaactgacgaccttc
ccagaagacacgccatggcttgctgaagccaaaatgatacttgcggatcatattgatcac
ctaggcaaccgtgactacaagctcgtcatcaaagagactaagctgaaagaagccgatctg
cgtgaagtcttaaagcttatccaacagttagatcctcgtccaggtagtcgcatcactcct
gatgataccgagtacgtaattccagacgtatccgtttttaaagacaatggcaaatggacc
gtttctataaacccggatagcgtgccaaaattaaaagtaaatcaacaatatgctcagtta
ggcaaaggtaatagcgcggatagccagtacatccgcagcaatttgcaagaggcaaaatgg
ttaattaagagcttagagagtagaaacgagacgctactcaaagttgcaagatgtattgtt
gaacatcaacaagatttcttcgagtatggtgaggaagccatgaagccaatggtactcaat
gatgtcgctttggctgtggacatgcatgaatccacgatttctcgtgtaacaacgcaaaaa
tttatgcatacaccacgtggtatttttgaattgaagtacttcttctctagccatgttagt
actgacaacggcggagaatgttcgtcaacagcaattcgtgcactcattaaaaaactggtc
gcagcagagaatactgccaaaccactgagtgatagcaagattgctgctcttctggctgac
caagggattcaggtcgcaagacgtacgatagccaaatatcgcgaatccttgggaattgcc
ccttcaagtcagcgtaaacgcctattataa
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