Vibrio sp. sp1: H9L11_05260
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Entry
H9L11_05260 CDS
T11103
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vip Vibrio sp. sp1
Pathway
vip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L11_05260 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vip03019
]
H9L11_05260 (rnr)
03016 Transfer RNA biogenesis [BR:
vip03016
]
H9L11_05260 (rnr)
Enzymes [BR:
vip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H9L11_05260 (rnr)
Messenger RNA biogenesis [BR:
vip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L11_05260 (rnr)
Transfer RNA biogenesis [BR:
vip03016
]
Prokaryotic type
tRNA degradation factors
H9L11_05260 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
KIP1
Motif
Other DBs
NCBI-ProteinID:
QRZ23521
LinkDB
All DBs
Position
1:complement(1121173..1123680)
Genome browser
AA seq
835 aa
AA seq
DB search
MSDNIPNDPFADRESKNYENPIPSREFIIEFLEQAGVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHRDGHGWVRPEGSVGKDDDILLPHH
QMKNIIHGDFVLVQPTDNSKRGRREGRLVRVLEERNDQIVGRFFLEYGYSYVVPDDSRIS
QDILIPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPEAVDKQIENLGEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKNKEGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISDTGKLSGYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHKM
YKVLKEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQISGRQDQE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATRDVADWLKCEYMQDHVGDELDGVIA
NVTSFGFFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLDDKQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKDKKRAATRSSLKEGGAARAVPA
IEPTKRPEETGATSKRNGPKRGDAEGNEKPKVKKARKKKPHSKPKKTKRTKKEAQ
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatattccaaacgatccttttgcagatcgtgaatccaaaaattacgaaaat
ccaattccaagccgagagtttatcatcgagtttctagagcaagcgggcgttccaatgaat
cgtaacgacttgtttgaggcactaaagcttgagggcgaagagcaatacgaagggttgcgt
cgtcggctacgtgcgatggagcgagatggccaactggtgtttacccgccgtcagtgctat
gcattgcctgaaaaacttgaaatggtgaaaggttacgtgattggtcatcgtgatggccat
ggttgggtacgtccagaaggcagcgtcggcaaggatgatgatattctgttaccgcaccat
cagatgaagaacatcatccacggtgattttgtcttagtgcaaccgacagacaacagcaag
cgcggccgccgtgaaggacgtttggtgcgtgtgctagaggagcgtaatgatcaaatcgtc
ggtcgtttcttccttgaatatggatactcctatgttgtcccagatgactcgcgtatcagc
caagatatcctgatcccaaatgagcacaaagcgggtgcacgcatgggtaacgtagtcgta
attgaaattactgatcgtggctcacgctcacgcggcatgatgggtaaagtggttgaagtc
cttggtgaaaatatggcaccaggtatggaaacacaaattgcgattcgtacacaccaaatc
cctcacgaatggccagaagccgtcgataaacaaatcgaaaacttaggcgaagaagtacca
gaagaagcgaaagttggtcgtgtggatctacgtgatttgccactagtgaccattgacggc
gaagacgcacgagactttgatgatgccgtttactgtgaaaagaacaaagaaggtggttgg
cgtttatgggtagcgattgctgacgtcagttactacgttcgtcctgactctgcgttggac
aaagaagcgatcaatcgtggtaactcagtatatttcccgtcgcaagttgtgccgatgttg
ccagaagtactgtcgaacggtctatgttcgcttaacccgcaagtagatcgcttgtgtatg
gtgtgcgaaatgaccatttccgatacaggtaagctgtctggttacaagcattacgaggcg
gtgatgaactcgcacgctcgtctcacatatagcaaagtgagcgcgattctagaaggggat
gaagaactacgtgagcgctaccagccgcttgtttctcatctagaagagttgcacaagatg
tacaaagtgctgaaagaagcacgagatcaacgcggtgcaatcgaatttgaaaccgttgaa
accaaatttattttcaatgcggaacgaaaaatcgaaagtattgagccagtaattcgtaat
gacgcgcataagatcatcgaagaatgtatgattttagccaacattgcttcggcatcgctg
gtagaaaaagcgaaagagcccgcgctttatcgtatccacgaatctccaggtgaattacgc
ctgcaaggtttccgtgacttcttaagtgaacttggtcttgagctaaaaggtggtttagag
ccttcaccaacggactatgctgatctcgcacgtcaaatctccgggcgtcaagatcaagag
ttgattcagaccatgctgctacgctcaatgaagcaagcggtatacaacgcagataacgcg
gggcactttgggttggcattgaaacgctatgcgcactttacgtcgccaattcgtcgttac
cctgacttgttacttcaccgtgcaatcaagtatctgattgctaaagaagaaggtcgtaat
caagatcgctggacaccaacaggtggctatcattactcgtttgacgacatggatttttac
ggcgaacaatgttcgatgacagagcgccgtgctgatgatgcaacacgtgatgttgcggat
tggctgaagtgtgaatatatgcaagaccacgtcggtgacgaactagacggtgttattgct
aatgtcactagctttggcttctttgtacgtttaacggatttgcacatcgatggtttggtg
catatttctacccttgcgaacgactactatcaatttgacccgattggtcaacgacttatt
ggtgaaagtttcggtaacatctaccgcttaggtgatgcagtaaaagtaaaagtactggct
gttaacctcgatgataagcaaattgactttgaattggtcgaaacaagtcgtaagctacgc
ggcgaaggtaagactgcgaagaaacgcgcagcggaagcaaaacgcaaagcgaaagataaa
aaacgcgctgcgactcgctcttcattgaaagaaggtggcgcggctcgtgcagttcctgcg
atagagccaactaaacgcccagaagaaacgggcgcaacgagtaagcgtaatggcccaaaa
cgtggtgacgccgaaggcaacgagaagcctaaagtgaaaaaagcacgtaaaaagaagccg
cacagtaagccgaagaaaaccaagcgcactaaaaaagaagcgcagtag
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