Vibrio sp. sp1: H9L11_06405
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Entry
H9L11_06405 CDS
T11103
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vip Vibrio sp. sp1
Pathway
vip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L11_06405 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vip03019
]
H9L11_06405 (recQ)
03400 DNA repair and recombination proteins [BR:
vip03400
]
H9L11_06405 (recQ)
Enzymes [BR:
vip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L11_06405 (recQ)
Messenger RNA biogenesis [BR:
vip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L11_06405 (recQ)
DNA repair and recombination proteins [BR:
vip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9L11_06405 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QRZ23702
LinkDB
All DBs
Position
1:complement(1358597..1360432)
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AA seq
611 aa
AA seq
DB search
MTSTLLAEQSDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCY
QIPALVRSGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLK
LVYVSPERVLMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPF
MALTATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLVEKHKPVSQIVRYLETQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVETHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVTLELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaccttgttagccgaacaatctgattcgcctgtaacgcctcaacgtgtgttg
gaggatgtgtttggttaccaagagttccgtgatggtcagcagttggtgattgatgctgcg
gtagaaggtcgcgacagcttagttatcctgcctacgggtggcggtaagtcgctgtgttat
caaattcctgctttggttcgctctggcattactttggtcatttctccgcttatctcgctg
atgaaggaccaagtggaccagcttaaagccaacggtgtagcggctgagtgcattaactcg
accatgcctcgtgaagagctgctcagcgtgtataaccgcatgcacactggtcatcttaag
ttggtgtacgtctcgccagaacgcgtattgatgcgtgatttcattgagcgcttggaaaac
ttgccgctatcgatgattgctgtcgatgaagcgcattgtatttcccagtggggacacgat
ttccgtccagaatatgccgcgcttggtcaacttaagcagcagttttcccatgtgccattt
atggcgctgacggcgacggcggatgatgcaacgcgccgagatattcttgagcgtctgcaa
ctgaataatccagaggtttacctaggcagcttcgaccgtcctaacattcgctacaactta
gttgagaagcacaagccggtttcgcaaatcgttcgttatctggaaacccaaaagggtaac
tgcggcatcatctattgtggtagccgtaagaaagttgagatggtgaccgagaagctgtgc
aacaaccacattcgtgctgctggttatcacgcaggtatggacgctgatgagcgcgcttac
gttcaagaagctttccaacgtgatgacatccaaattgtagtggcgaccgtggcattcggt
atgggcatcaacaaaccaaacgtgcgttttgtggttcactttgatatcccgcgcaacatc
gagtcttactaccaggaaacgggtcgtgcagggcgtgatggtttacctgcagaagcgatg
atgttgtatgacccagcggacatcagttggctgcgccgtatgttggatgagaaagacgat
ggtccacagaagcaggtggaaacccacaaactgaatgcgatgagtgcctttgctgaggcg
cagacttgtcgtcgtcaggtgctattgaattactttggtgagtatcgtgagaagccatgt
ggcaactgcgatatttgcttagatccaccgaagcactttgatgcaacagaagaagcacgt
aaggcgttgtcttgtgtgtaccgtgttaatcaaagctttggtatgggttacgtggtagaa
gtgctacgtggcatgcaaaatattcgtgtacgtgaaaacgggcacgataagatttctacc
tacgcgatagggcgcgatcacagccacgattactgggtgagtatcttccgtcaattaatc
cacaaagggctgttgttccaaaacatcacgcgtaactcaacgctgcaacttaccgaagaa
gcgcgtccgctgctacgtggcgatgtgactctggagttagcggttccacgtttagacact
gcagcacgtgcggcgaaatcagataaactgaccagcaagaactacgacaaaaagctgttt
gctaagttacgtaagctgcgtaagtcgattgctgatgaagatggtttgccaccatacgtg
gtctttagtgatgcgactctgattgatatggcggaaattctgccaacgtcttacggcgaa
atgctggcagttagcggcgttggtcagcgcaaactagagaagtacgccgacccattcctc
gatttgattcaagaacacattactcaccacggataa
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