Vibrio sp. sp1: H9L11_11875
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Entry
H9L11_11875 CDS
T11103
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vip Vibrio sp. sp1
Pathway
vip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9L11_11875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vip03400
]
H9L11_11875 (mfd)
Enzymes [BR:
vip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L11_11875 (mfd)
DNA repair and recombination proteins [BR:
vip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9L11_11875 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
QRZ21886
LinkDB
All DBs
Position
1:complement(2516344..2519805)
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AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQTVSLFPDWETLPYDNFSPHQEIISERIARLYQLPSQRDGITIVPVSTVLQRQS
PRDFLLQHTLMVKTGDRLSLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSND
PYRIDFFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFDAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFEYLPEDSQVITYGDIESAVDTFLTDV
EYRYDQKKVDPLRPLLTPEQLWLKKDELFSQLKQLPIAQLSLDKVVKRAGRQNLPVQSLA
ELGVQQQNKEPLSRLRQFSEQFSGKIVFSVESEGRREALTELLQGIKVRPVVHGSLYQAL
DSGDRFSLVLGAAEHGFIHEELNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGFKFELDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQKEEPVVREAVLREIMRGGQVYFLHNQVESIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVQALKEGKEPSLDELLREQTEVEMRIPALLPDDYI
PDVNTRLSMYKRIASVTSSDELSELKVELIDRFGLLPDATKNLLAVSELKISAGSLKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLVDRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacgattctttccgtcaccaacccttcagagcgtggcgacaaaaaacag
ctaggtaatttgccgggcgcagctctacctctagccattgcagagctagccaagcagcat
tcgagtcactcgctactcgttgtgcctgacccgcaaatcgctttaaagcttcaggcagag
attgagcaattcaccgaccaaacggtaagcctgttccccgactgggaaacgctgccttac
gataacttttctccgcatcaagaaatcatctctgaacgtatcgctcgcctataccaactg
ccaagtcaacgtgatggcataaccatcgtcccggtcagtacagtattgcaacgccaatcg
ccacgtgattttctgttgcaacacactttaatggtgaaaactggtgatcggctctcgcta
gagaagttacgtgtacaacttgaaaattctggctaccgccatgtagatcaagtatttgga
ccaggtgaatatgcaagtcgtgggtctattctggatctctttcctatgggcagcaatgac
ccgtaccgcatcgacttctttgatgatgaaatagataccattcgcacgtttgatccagag
aaccaacgctctatcgacgatattcagcaaatccaattgctgcctgcacatgagttccca
accactaaagaagcgattgaagatttccgtacacgttggcgcacccagttcgacgcacgc
cgcgagcctgaatcaatctacatgcaagtgaccaaaggcacgtggcccgctggtattgag
tattggcagccgctgttttttgaccataccgagactttatttgaatatttgccagaagac
tctcaagtcatcacatatggtgatatcgaatctgcggtcgatactttcttaaccgatgtc
gaatatcgatacgaccagaaaaaagttgatccgctgcgtcctcttttgactcctgaacag
ctttggttgaaaaaagacgaacttttcagtcaactaaaacagctccctatcgctcaattg
agcctagataaagtggttaagcgtgccggtcgtcaaaacctaccagtacaatcgttagcc
gagcttggcgttcaacaacaaaataaagagccgctctcgcgccttcgtcagtttagtgag
caattcagcggcaaaatcgttttctcggtagagtcagaaggtcgtcgtgaagcactaacg
gagctgttgcaaggcatcaaagttcggccagtcgtacatggctcactttaccaagctcta
gactcgggtgatcgattcagcttggtcttaggcgcagcagagcatggtttcattcacgaa
gagctgaacttcgctctgatctgtgaaagtgatctactcggtgaccgtgttatccagcga
cgccgcaaagataaaaaagccgtcaacagtgacaccgttattcgccaccttgccgaacta
aaacccggccaacctgtggttcatattgatcacggtattggccgctacatcggtttacaa
acacttgaagccggtggtatgaaaacggaatacgtcacccttgagtatcaaaacgatgcc
aagctctacgtgccagtttcatcactgaatcttatcagccgttattctggcggcgctgaa
gagagtgcgccactgcataaattaggtggtgaagcgtgggcaaaagcacgtcgtaaagcg
gcagaaaaagtgcgtgatgtcgcggcagaattgctggatgtgtatgcaaaacgagaatta
aaaccgggcttcaaatttgagctagatcgtgggcaatacgcaacatttaaagcaacattc
ccgtttgaagaaacagatgaccaagcgatggccatcaatgccgtattgtcagacatgtgc
caggcaaaagcaatggatcgcttagtatgtggtgacgtgggctttggtaaaacggaagtc
gctatgcgcgcagcatttgtcgcaacggataatagtaaacaggtcgccgtactcgtacca
acaaccttacttgctcagcagcatttcgaaaacttccgtgaccgttttgccaacttacca
atccgagttgaagtactgtctcgttttaaatctgccaaagaacaaaaagtcattctgcaa
gacgttgccgatggtaaagtcgatattgtcgttggtacgcataagctgctttcgagcgac
attaaattcaaagatttaggtttgttgatcgttgatgaggaacaccgctttggggttcgt
caaaaagaaaaagtcaaagcaatgcgtgcggatgtggacattcttaccctcaccgcaaca
ccaattccacgcacactgaatatggcaatgagtggcatgcgagacctgtcgatcatcgcg
acacctcctgcacgccgtttagccattaaaacctttgttcgacaaaaagaagagccagtg
gtccgtgaagcggtactgcgtgaaattatgcgtggtggtcaggtttacttcctgcacaat
caggttgaaagcattgaaaaaacggcagaagacttacagaaactcatcccagaggcacgc
attaccgtggctcatggtcaaatgcgcgagcgcgaacttgagcgaatcatgaatgacttc
taccatcagcgctttaatgtgttggtgtgtacaaccatcatcgaaaccggtatcgacgta
ccaacggcgaataccataatcatggatcgtgcggacaatcttggcttggcgcagttgcat
caattacgtggccgtgttggacgttcacaccatcaggcctatgcttacttattaacgcca
catccaaaagccatgaccaaagatgccatcaagcgtcttgatgcgattgcttcactggaa
gacttaggtgctggctttacgttagcaacccacgatttagaaatccgtggtgctggtgag
ctgcttggtgatgagcaaagtgggcaaattcaatccgttggttttacactttatatggaa
atgctggaacaagcagtgcaagcattaaaagaaggcaaggagccatctttggatgagctg
cttcgtgagcaaactgaagtggaaatgcgaatcccagcgctcttaccagatgattacatt
ccggatgtaaacacacgactgtcgatgtacaaacgcattgcgagtgtcacaagcagtgat
gaactatcagagctaaaagtggaactgattgatcgctttggtttgcttccagacgcaaca
aagaacttacttgccgtctcagaattgaaaatttcggctggtagtttaaaagcgaaaaag
atagaagcccatgataaaggtggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttagttaaactgctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattggtggaccgacgtaaacgcattcagtttgttcaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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