Vibrio sp. sp1: H9L11_12105
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Entry
H9L11_12105 CDS
T11103
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vip Vibrio sp. sp1
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vip03032
]
H9L11_12105 (topA)
03400 DNA repair and recombination proteins [BR:
vip03400
]
H9L11_12105 (topA)
Enzymes [BR:
vip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H9L11_12105 (topA)
DNA replication proteins [BR:
vip03032
]
Prokaryotic type
DNA Topoisomerases
H9L11_12105 (topA)
DNA repair and recombination proteins [BR:
vip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H9L11_12105 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QRZ21931
LinkDB
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Position
1:2571683..2574313
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVNELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKAD
FKLLVAQKDGSAFKPVNEAETKAAMSVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSNVGVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYLVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVAELARFEERLPEKFKYLATAPQEDPDGRPAVVRFSRKT
KENYVRSEENGKPSGWTALFVDGKWEVTDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacgataaataagtac
cttggtaaagactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgcagccatctcaactaaagggatgagtccggaa
gagaaagcgcgcgttaaaaaagagaaagaccgcaaagcgttgatcaaaaagatggggatt
aacccatatcatgactgggaagcgaattaccaaatccttccaggcaaagaaaaagttgtc
aacgaactacaaaaactcgccaaagacgcagattgcgtttatctcgcaaccgatttggac
cgcgaaggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgtgtagtttttaacgaaattacgaaaaacgcgatccaacaagctttccagaca
cctggcgagctgaacatggatggtgtaaatgcccaacaagcacgtcgcttcatggaccgt
gtcgttggttttatggtttcacctttactttggaaaaaagtagctcgtggcttatctgct
ggtcgagtgcagtctgttgcggtgaaattgttagttgagcgtgagcgtgagattaacgcg
tttgtaccagaagaattctgggacattcatgcgaatacgaaaacgaaagacaaagcggac
tttaaactgcttgttgcgcagaaagacggttctgcgtttaagccagttaatgaggcagaa
accaaagcagcgatgtctgtacttgagaatgcaagttacgaagtatgtaagcgtgaagac
cgtcctacaaagagcaagccttcagcaccttacatcacctctacgcttcaacaggcagcg
agtacacgtctgggctacggcgtgaaaaagaccatgatgctagctcagcgcctctatgag
gccggttacatcacttacatgcgtactgactcgactaacctaagtgccgaggctgtggac
gctgtacgtgactttattggttctgagtttggtgataagtacctgccagcgaaaccattg
acgtacggtagcaaagaaggggcacaggaagcgcacgaagcgatccgtccttcaaatgtg
ggtgttaaggcggaagacctgcaaggtgtcgatgctgatgcgcacaaactttacgctttg
atttggaatcagtttgtagcgtgtcaaatgacgccagcagaatacgattcaacaaccatc
agtgtaaaagcggcagaatacacgcttaaagcgaaaggccgtatccttaaatttgacggc
tggactcgtgtacagcgtccaatgggcaaaaacgaggatacaatccttcctgcggtacaa
cttggcgataagctaagcttagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctacactgaagcagcactggttaaagagctggagaaacgaggtattggtcgtccg
tcgacttacgcatcgatcatttctacgattcaagatcgtggctacgtgaaagttgatcag
cgccgtttctacgctgaaaaaatgggtgaaattgttactgaccgccttgatgacagcttt
aacgatttgatgaactacgactttactgcgcgtatggaacagaaattggaccaaatcgct
gaaggtgaagtgaactggaaagctgtgttagacaacttctttgctgattttactggcgat
cttgaaaaagcggagctggatgagtcagaaggcggtatgaagttaaaccacatcgtcatg
acggatatcgagtgtccgacgtgtagccgtccaatgggcatccgtactgcttcgacaggt
gtgttcttaggctgttcaggttacgcgttaccaccaaaagagcgttgtaagacaaccatc
aacttgggtgacgaagaaggtattattaacgttctagaagaagacgttgaaaccgcagct
cttcgtgctaaaaagcgttgtccgatctgtgaaacagcgatggacgcatacctgattgat
gacaagcgtaagatgcatgtttgtggtaataacccgaattgtgaaggctaccttgttgaa
tacggcgagttcaaagtaaaaggctacgatggtccagttgttgagtgtgacaaatgtggc
tctgatatggtgcttaagaacggtcgctttggtaaatacatggattgtacgagcgaaacg
tgtaagaacactcgtaagattcttaagaatggcgaagtcgcgccaccgaaagaagatcct
gttcatttccccgagttgccatgtgaaaactcagatgcgtatttcgtacttcgtgatggt
gcttcaggtctatttatggcggcaagcaacttcccgaaatcgcgcgagacacgtgctcct
ttggttgctgaactggcacgttttgaagagcgtttacctgagaagttcaaatacctagcg
accgcaccgcaagaagatcctgatggtcgtcctgcagtcgtacgctttagtcgcaaaaca
aaagagaactacgttcgttcggaagagaatggcaaaccatctggttggacagcgctcttt
gttgacggtaagtgggaagtcactgataagcgtaaaaaagcgaaagcataa
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