Vibrio sp. sp1: H9L11_13355
Help
Entry
H9L11_13355 CDS
T11103
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vip Vibrio sp. sp1
Pathway
vip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
H9L11_13355 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vip03400
]
H9L11_13355 (sbcB)
Enzymes [BR:
vip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
H9L11_13355 (sbcB)
DNA repair and recombination proteins [BR:
vip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
H9L11_13355 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
H9L11_13355 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9L11_13355 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QRZ22168
LinkDB
All DBs
Position
1:complement(2853340..2854761)
Genome browser
AA seq
473 aa
AA seq
DB search
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPE
AALITGITPQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHD
AMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVH
LNKCPILAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDD
VDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQ
EQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaagataatcagcccacttttttcttctttgattatgagacatggggaaccaac
cccgcgaaagatcgcccaagccagtttgctggtgctcgtacagatgaaaactttaatatc
atcggcgagcctttagtcatgtactgtcaaccaccggctgattatcttccgtctcctgaa
gctgcgcttattactggtattactccgcaaaaaacggttcaagaaggcctttctgagcca
gagtttatcgctaagattcacgctgaactcgcgagaccaaataccaccagtttaggctac
aacagcattcgctttgatgacgaagtgacccgttatacttgttatcgcaacttcatcgat
ccatacgcatggagttggcaaaacggtaactcgcgttgggatttactcgatgtactacgc
gcgtgccatgcccttcgcccagaaggcgtagaatggccagaaaacgaagatggcttcact
agctttaaattagaacatttgtccgtggctaacggcatagaacatagtaacgcgcacgat
gcgatggcagatgtggttgcgactatcgaaatggcaaagaaagtaaaagcagcgcaacca
aaattgtttgattactttttttctatgcgccaaaagcgcaagctcaatgatttagtcgac
atcgtcaacatgacaccgttgatgcacgtttcaggcatgctagggcgcgaatgtcagtac
actagctggattgtgcctgttgcttggcatccaaccaataataacgccgttatcaccatc
gatttagcgaaagaccctcaacctattcttgagctatccgcagaagagctgcacgaaaga
ctctacacgaagcgcgaagatcttggtgaattgctaccagtgccagttaaactagttcat
ttgaacaaatgccctattctcgcccctgcaaaaacgttaacggctgaaaatgcggagtct
attggcattgatcgccagcaatgtctcgccaatctcgctttgttgcgccaacatcctgaa
attagagaaaagctgattagcctcttttcagtcgagcgcaaattcgataaaagtgatgac
gtcgatacacaactttacgacgggttcttttctccagccgatcgcgcagctatggatatc
attcgcgaaaccgatccgaataatcttgctgcattagacattgaatttgatgacaagcgt
attaaacctctattgttccgctatcgtgcgcgtaacttcccaggcacactagacgagcaa
gaacaaagacgctgggcactacactgtcgagaagtgtttgaaagccaaattgaagagtac
atgctgaatttagaaaacttagttcacgaacatgaaagtgacgaaaagaagattgcgata
ttaaaatccgtgtaccgttatgtagagagcttagcttcctaa
DBGET
integrated database retrieval system
