Vibrio sp. sp1: H9L11_14315
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Entry
H9L11_14315 CDS
T11103
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vip Vibrio sp. sp1
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vip03019
]
H9L11_14315 (hrpA)
Enzymes [BR:
vip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H9L11_14315 (hrpA)
Messenger RNA biogenesis [BR:
vip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H9L11_14315 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
ResIII
AAA_22
nSTAND3
T2SSE
ABC_tran
nSTAND_NTPase5
NACHT
SLFN-g3_helicase
DUF6145
PhoH
TsaE
AAA_30
NAT10_TcmA_helicase
Zeta_toxin
NTPase_1
AAA_25
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QRZ22352
LinkDB
All DBs
Position
1:3069086..3073072
Genome browser
AA seq
1328 aa
AA seq
DB search
MTSSQPPKKNLAEEQATPSNGAQKATAKQAQTPQAQVNSAASLRKALNQCMMRDRFRLSK
RISGASKIKKDAARNAVFDEIALDIAKSMMVVEQRSSYKPTIEYPEILPVSQKRDDIAKA
IEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAARSVANRIAEEMETK
LGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFI
LGYLKELLPRRPDLKVIITSATIDPERFSKHFNNAPIIEVSGRTYPVETRYRPLSGDDDN
DRDQLEGIFEAVDELCDEGLGDILIFMNGEREIRDTADALSKRNLKSTEIVPLYARLSAG
EQNKIFQPHTGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQ
ASANQRKGRCGRVEEGICIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQA
FPFVEAPDKRNIQDGVRLLEELGAINSEVKDPKKRLTSIGRQLARLPIDPRLARMVLEAP
KYGALKEVMIIAAALSIQDPRERPSDKQQSSDDKHRRFFHEESDFLTFVNLWEYIQKQQK
ALSSNQFRKQCKQDYLNYLRVREWQDVYFQIHQSMREMEFKLNDEPASYHGVHSAILVGL
LSHIGMKDQEKNEYQGARNARFHIFPASGLFKKQPKWIMSAELVETSKLWGRIIAKIQPE
WIEPLAKHLIKRSYSEPHWSKKRAAVMAHEKVMLYGVPIVPKRLVNYGSIDSIVSREIFI
RSALVEGEWETKHAFFKQNRKLLQEVEELEHKSRRRDILVDDDELFDFYDQRVGTEVVSG
KHFDTWWKKASKENPELLNFEKEMLFKGDASHVTDLDYPNFWHQNGLKLKLSYQFEPGDD
SDGVTVHLPLPILNQVEPAGFDWQIPGLRHELVVSLIKSLPKTIRKNFVPAPNYADALLA
RVTPMEAPLLDSLEKELRRMTGVEVLREDWNLEQVPEHLKVTFRAVDHRNRKLKENKDLH
ELKESLKDKVQETLSKVADDDIEQQGLHTWSFGELPKVYQQKRGGYDVKAYPALVDTKDS
VEIKLYETEYEQITAMRAGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLID
DCIACGVDKLIEEQGGLVWEPEKFEALKEHVRAELGDTVVEIAQQVETILTTAFSINKKL
KGKIDFTMAFALSDIKAQIEGLIFKGFATECGWKRLPDILRYMRAIERRMEKLPIDPNKD
RLHMLKIESVTQDYKELLNKIPKGVAIPENVKEVRWMIEELRVSYFAQQLGTPYPVSDKR
VKNAIDAC
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagcccccaaaaaagaatctagctgaagagcaagcgacaccgtcaaat
ggtgcgcaaaaagcgacagcgaaacaagctcaaacacctcaggctcaagtgaatagtgct
gcatctctgcgtaaagcgctgaatcagtgcatgatgcgcgaccgtttccgcttgagtaaa
cgtatttctggtgcaagcaaaattaagaaggacgcagcgcgtaatgctgtgttcgacgaa
atcgcattagacatcgccaaatccatgatggttgtggagcaacgtagtagctacaaacca
acgattgaataccctgaaattcttccagtcagccaaaaacgcgacgatattgcgaaagcg
atcgaagaaaaccaagtggttatcgtcgcgggtgaaaccggttcaggtaaaaccactcag
ctacccaaaatctgtgctgagcttggtcgcggtaaatttggtctgattggtcatactcag
cctcgtcgtcttgcagcgcgttcggttgctaaccgtattgccgaagagatggaaaccaag
cttggtgagtttgttggttacaaggttcgattcaacgatcagatctctgaaaatacccaa
atcaaattgatgacggacggtatcttgctagctgaaattcagcatgaccgtttcttgaat
caatacgacaccatcattatcgatgaagcgcacgagcgcagcctcaacatcgatttcatc
ttgggttacttgaaagagttgctgccacgtcgtcctgatttgaaagtgatcatcacgtcg
gcaaccatcgacccagaacgcttctcaaaacacttcaacaatgcaccaatcattgaagta
tcgggtcgtacttacccagtagaaacacgttaccgcccactaagcggtgatgacgacaat
gatcgtgaccagcttgaaggcatcttcgaagcggtagatgaactgtgcgatgaaggttta
ggtgacatcctgattttcatgaacggtgaacgtgaaatccgtgataccgcagatgcattg
tccaaacgtaatctgaagagcacggaaattgtgccgctttacgcgcgtttgtcggcaggt
gagcagaataagattttccaacctcacactggtcgccgaattgtactggcaaccaacgtg
gcagaaacctcgctaactgttccgggtattaagtacgttattgacccgggtacagcgcgt
attagccgatacagttaccgtaccaaggttcagcgtcttccaatcgagccagtttctcag
gcgagtgcgaaccagcgaaaaggtcgttgtggtcgtgtggaagagggtatttgtattcgt
ctgtactcagaggaagattttgagtcacgcccagagtttactgatcctgaaatcctgcgt
accaacctagcgtcggttatcttgcaaatgacggcacttggtttgggtgatattcaagcg
tttccgtttgtggaagcaccggataaacgtaacatccaagacggcgtgcgtttgctggaa
gagcttggtgcgattaactctgaggtaaaagacccgaaaaagcgcctgacttccattggt
cgccaattagcgcgtttgccaatcgatccgcgcttggcgcgtatggtattggaagcgcca
aaatatggtgcgcttaaagaagtgatgatcattgcagcggccttgtcgattcaagatcca
cgcgaacgtccttcagataaacaacaatcttcagacgataaacatcgtcgcttcttccat
gaagagtcggacttcctgacatttgtgaatttgtgggaatacatccaaaagcagcaaaaa
gccttgtctagcaatcagttccgcaaacagtgtaagcaagactatttgaactacttgcgc
gttcgcgagtggcaagacgtgtacttccaaattcatcagtcgatgcgtgagatggagttc
aagcttaacgatgagcccgcttcttaccatggcgtacacagtgccattttggttggtttg
ctgtcgcacatcggcatgaaagaccaagaaaagaatgaatatcaaggcgcgcgtaacgct
cgctttcatatcttcccagcatcgggattattcaagaaacaacctaaatggattatgtca
gccgagctggtggaaacctcgaaactttggggccgcattattgccaagattcagccagaa
tggattgagccgttagctaaacaccttattaagcgcagttacagcgaaccgcattggtcg
aagaaacgtgctgcggtgatggcgcacgaaaaagtgatgctttacggcgtaccaatcgta
ccgaaacgcttggtcaactacggcagtatcgattcgatcgtaagtcgcgaaatcttcatt
cgtagtgcattggttgagggtgaatgggaaaccaaacacgcgttctttaagcaaaaccgt
aagcttctgcaagaagtggaagagcttgagcataaatctcgtcgtcgagacatcttagtg
gatgatgatgagctgtttgatttctatgaccaacgcgttggcaccgaagtggtgtctggt
aagcatttcgatacgtggtggaaaaaggcatctaaagaaaatccggaactgctgaacttt
gaaaaagagatgctgttcaagggtgatgctagccatgtgaccgatttggattacccgaac
ttctggcatcaaaatggtttgaagctcaaattgagttaccaatttgaaccaggcgatgat
agtgacggtgtcacagtgcatttgccgttgccgattttaaaccaagttgaaccagcgggc
tttgactggcagatcccaggtttacgccatgagcttgtggttagcttgattaaatcgttg
ccaaagacaattcgtaagaactttgtgcctgcgccgaactatgccgatgcattattagcg
cgcgttacgccaatggaagcgccgctgttagattcattggagaaagagttgcgacgcatg
acgggcgtagaagtgctgcgtgaagactggaacttggaacaagtacctgagcacttgaaa
gtcacgtttcgtgcggttgatcaccgaaatcgtaaactgaaggaaaacaaagaccttcat
gaactgaaagaaagtttgaaagacaaagttcaagaaacgctttccaaagttgcggatgac
gatatcgaacagcaaggtctgcatacgtggagttttggagaattgccgaaagtgtatcaa
caaaaacgtggcggctacgatgtaaaagcgtatccggcgcttgttgataccaaagacagc
gttgaaatcaaactctacgaaacggagtacgagcagataacggcaatgcgtgctggtcag
cgtcgcctaattttattgaacgtaccgtcgccaattaaatatttgcacgccaacttaccg
aacaaatcgaagctgggtctgtactttaatccatacggcaaagtgcttgatctgatagat
gactgcattgcctgtggtgtcgataagcttattgaagagcagggtggtttagtttgggag
ccagagaagttcgaagcgttgaaagaacacgttcgtgctgaattgggtgacaccgttgta
gagattgctcaacaggttgagactattctgaccacggcgtttagcatcaataagaagcta
aaaggcaagatcgacttcacaatggcgtttgctctgtccgatatcaaagcacaaattgaa
ggcttgatcttcaaaggctttgcaacggaatgtggctggaaacgcttgccggatattctt
cgctacatgcgcgcgatagagcgtcgtatggagaagttgccaatcgatccaaacaaagat
cgtttacatatgctgaagattgaatctgtgactcaagactataaagagttgctgaacaag
atcccgaaaggtgtggccattcctgaaaatgtaaaagaagtgcgttggatgattgaagag
cttcgcgtgagttattttgctcaacaattaggcactccttatcctgtttctgataaacga
gtcaaaaacgcgattgatgcttgctaa
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integrated database retrieval system
