Vibrio sp. sp1: H9L11_19895
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Entry
H9L11_19895 CDS
T11103
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vip Vibrio sp. sp1
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vip03016
]
H9L11_19895 (rnb)
Enzymes [BR:
vip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H9L11_19895 (rnb)
Transfer RNA biogenesis [BR:
vip03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H9L11_19895 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QRZ24125
LinkDB
All DBs
Position
2:complement(992465..994468)
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AA seq
667 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCMHGDKV
IAIIRTENEREVAEPQELLEQAVTRFIGRVKMFKGKLNVAPDHPQLKKLSLKAKLKKGLK
PDEFAEGDWVVAHLIRHPLKGDNSFFVEISEKITDANDKIAPWWVTLAQNDLPNSEPAGI
DNWELKDDAELERVDMTHVPFVTIDGESTKDMDDALYAKKTVSGDFELTIAIADPTAYIT
PEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGETRPAICCTVTVSKDGVIGD
NIKFFAANIKSHARLVYDHVSDWLENGSSEAWTPSEEIATIVRDLYEFSLARAEWREKNA
VVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLRDKFETGVFNT
HAGIKNEKIEEVVQLVNPEGQLEFTAESIATLEGFAALRRWLAAQETSYLDNRIRKFQAY
SEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILGKEPVQKPDDQVGEELAL
HRKHHKIAERNVSDWLYARTLADEPSKKTCFTGEIFDINRAGARVRLLENGAAAFIPGAL
ILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLTDVNQENRSLVAKPTQVFAEQPAAQ
TEQTVSE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccactactcgctcagcttaagcagcaaatccaagaaaacctgcct
aaaaaagaaggctcaataaaagccacagataaaggctttggctttttggaagtggacagt
aagacgagcttcttcatcccgcctgcgtacatgaaaaagtgcatgcacggtgacaaagtc
atcgccattatccgcaccgaaaatgaacgcgaagttgcagagccacaagagctgctggaa
caagccgtgactcgctttattggtcgagtaaaaatgttcaaaggcaagctcaacgtagca
cctgatcacccacagcttaaaaagctatctcttaaagcgaaactaaagaaaggtctaaaa
cctgacgagttcgccgaaggtgattgggttgtcgcacatcttattcgccaccctctaaaa
ggcgataactctttcttcgtagaaatttctgaaaaaatcactgacgcgaatgataaaatt
gcgccttggtgggtaacgcttgctcaaaacgatctaccaaactctgagccagcaggcatc
gataactgggaactaaaagacgacgcggagctagaacgcgtagacatgactcatgttcca
ttcgtcactatcgacggtgaatcgactaaagatatggacgatgcgctgtacgcgaagaaa
accgtatctggcgatttcgaactcaccatcgctattgcggacccaaccgcttacatcaca
cctgaagatgaaatggataaagtagcgcgtgagcgtggctatactatttatcttccaggc
cgcaacatcccgatgctacctcgcgatttagcggacaacctatgttctctgattgaagga
gaaacccgccctgctatttgctgtaccgtaacggtaagtaaagatggtgtgattggcgac
aatattaaattcttcgcggcaaacatcaaatcacatgcacgcctagtatacgatcacgtg
tctgattggttagaaaacggcagctctgaagcatggacgccatctgaagagatcgcgact
atcgttcgtgatctttatgagttctctcttgctcgcgctgaatggcgtgagaaaaacgca
gtggtcttccctgatcgtcctgactaccgttttgagctcagtgaagataacgatgtaatc
gctatccacgcagacatgcgccgcagtgcaaaccgtcttgttgaagaatccatgattacc
gcaaacatctgtgcaggtcgtacattacgcgataaatttgaaacaggtgtcttcaatacg
catgcaggtatcaagaacgagaagattgaagaagtggttcaacttgtcaatccagaaggc
cagttggagttcacagcggagtctattgctacgctagaaggctttgctgcgttgcgccgc
tggttggctgctcaagaaacgtcttatctagataaccgtattcgtaagttccaagcatac
agtgaagtgggtaatcagcctctgcctcattacgcaatgggtttagacatctatgcaact
tggacatcaccaattcgtaaatacggtgatatgatcaaccaccgtatgttgaaggccgtc
atccttggtaaagaacccgtacaaaaaccagatgaccaagtaggcgaagagctagctcta
catcgtaaacatcataaaatcgctgagcgaaatgtctcagattggctatatgcacgcacg
cttgctgatgagccgagcaagaaaacttgtttcacaggtgagattttcgatattaatcgt
gcaggcgcacgtgtccgacttctcgaaaatggcgcagcagcctttattcctggtgcacta
attcttgataataaagaaagaattgagtgcaatggcgacaacggtaccatctctatcgat
aaagaggtcgtatacaaacttggggatacattggaaattgtccttacggacgtaaaccaa
gaaaaccgcagtttagttgcaaagccaacccaggtattcgctgaacaaccagcagcacaa
acagaacagactgtaagtgaataa
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