Vibrio sp. sp1: H9L11_21325
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Entry
H9L11_21325 CDS
T11103
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vip Vibrio sp. sp1
Pathway
vip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L11_21325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vip03019
]
H9L11_21325
Enzymes [BR:
vip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L11_21325
Messenger RNA biogenesis [BR:
vip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L11_21325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
P-loop_SecA
Helicase_C_2
Helicase_RecD
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QRZ24398
LinkDB
All DBs
Position
2:complement(1315937..1317196)
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AA seq
419 aa
AA seq
DB search
MSVNFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLP
IIQTVQQKKLNGTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKL
EEGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQ
ILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGS
RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAIEN
LLDQRLPQEWLAGFEPSLVEEVEPEQNGGGRRRSRSSEKRKLKAKLAIHKNRGKSRSSR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttaattttgctgatttaggcatcgaacaaaagctaatcgagacgctaggcaat
ctaaatatcgtgacgccaacaccagtgcaagaaaagtcaattccacacgtccttgcagga
aaaaacttacttgctgctgcacaaactggtacgggaaaaacggctgcgtttggtttacct
atcatacaaaccgttcagcaaaagaaacttaacggcacacctcaagcattgattttggtt
ccaacacgcgagcttgcacagcaggtatttgataatttgaatcagtactcggcagaaaca
gaacttcgcatcgtgtgtgtttatggtggtacaagcattggcgtacaaaagagaaagtta
gaagagggcgctgatattttgattgccacgccaggccgccttttggatcacctgtttaat
ggtaacgtaaacatctctaaaaccggtatgctcgtgttagacgaagccgaccgtatgtta
gatatgggattttggcctgacttgcagcgcatcttccgacgtttgcctgctgagaaacag
atcctattgttctctgcgacatttgagaagcgaatcaaaactatagcgtataaactcatg
gaatcgccagttgaagtcgaagtttcaccagcaaatacgactgctgaaacggtaacacaa
atggtttatccagtggataaaaaacggaaacgtgaattgctagcgtacttaattggctcg
cggaattggcagcaagtgcttgtatttacaaaaacgaagcaaggcagtgatgagttagcg
aaagagctcaagttagatggcatcaaagcggtttctatcaacggcgataaatcacaaggt
gcccgccaaagagctttggatgaatttaaacaaggtaaggtacgtgctttgattgcaacc
gatgtggcagcacgagggttagacattcaagagctagaacaagtcgtgaactttgatatg
ccattcaaagcagaagattatgtccatcgaattggccgcactggaagagcaggaaagtca
ggtttggcggtttctcttatgagtagagatgaggagtacttgttgcaagctatcgagaat
ctgcttgatcaacgcttaccccaagaatggctggcaggtttcgaaccaagtcttgtagaa
gaagttgagcctgaacaaaatgggggtgggcgtcgtcgtagtcgttcatctgagaagcgt
aagctaaaagcaaaattggcgattcataagaatcgtggtaaatcacgtagctctcgctaa
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