Vibrio sp. B1Z05: QV280_09360
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Entry
QV280_09360 CDS
T11544
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
viq Vibrio sp. B1Z05
Pathway
viq03030
DNA replication
viq03430
Mismatch repair
viq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
viq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QV280_09360 (dnaE)
03430 Mismatch repair
QV280_09360 (dnaE)
03440 Homologous recombination
QV280_09360 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
viq03032
]
QV280_09360 (dnaE)
03400 DNA repair and recombination proteins [BR:
viq03400
]
QV280_09360 (dnaE)
Enzymes [BR:
viq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QV280_09360 (dnaE)
DNA replication proteins [BR:
viq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QV280_09360 (dnaE)
DNA repair and recombination proteins [BR:
viq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QV280_09360 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
YAW56969
LinkDB
All DBs
Position
1:complement(2063908..2067387)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTEPKFIHLRVHSDYSMVDGLSKVPPLVKKVAELGMPAVALTDFTNLCGLVKFYNKAHGE
GVKPIIGADFMMQSPEFGDELTRITVLSANNQGYKNLTLLISKAYLRGHVQHQPVIDKEW
LAELNEGLIVLSGGKSGELGKALLKGNDDLTQQCIDFYQQHFANRFYLELTRTGRVDEES
YLHFALECAQQSNLPVVATNEVVFLNPEQFDAHEIRVAIHDGFTLEDPRRPKNYSAQQYL
RTEEEMCELFSDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDMSIEEFLVHKSEEGL
EERLEFLFPDPKVRAERRPEYDERLQIELGVVNQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLSKAFDAEPQ
LGELYDADDEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFSPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKMGEEPVRIESIPLQDEASFRVL
QNSETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDETWQHDSLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
EKQRSVFKEGAENNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECIRMGLKILPPDVNSGLYRFNVDETGAIVYGIGAIKG
VGEGPIDSMIEARAKDGHFKDLFDFCARVDLKKCNKRVIEKLIQAGALDRLGPHRAAMMA
SVDAAVKAAGQYHQAEAFGQSDMFGVLTDTHSDVEQAYAQVPKWPEKVWLEGERETLGLY
LTGHPINLYLRELAKYTSCRLNNATPTRRDQSVTLAGLVIAAKVMTTKRGTRIGILTLDD
RSGRMEVMLFSDMLEKYAELVEKDRIVVVSGQVSFDDFNGGLKMTAREVMDLGHAREKYA
SGLSISISESQIDAQFFERFSRVLEPHRAGTIPVHIYYQRSDARAKLSLGVEWRVTPSDT
LIDDLKQLLGNDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgacagagccgaagtttatacatttacgcgtccacagtgactattccatggtggatggc
ttgtcgaaagtaccgcctttagtcaagaaagtggcagagcttggtatgcctgcggtagca
ttgaccgactttactaacctatgtggtctggtgaagttttataacaaggctcacggcgag
ggcgttaagcccattattggcgctgactttatgatgcagtcacccgagtttggtgatgaa
ttaacccgtatcacagtcttgtctgctaataaccaaggttataaaaacctgactctattg
atttctaaagcctacctgcgcggtcatgttcaacaccaacctgttatcgataaagaatgg
ttagccgagcttaacgaaggtttaattgttctctctggcggtaaaagtggcgagttaggc
aaagctttattaaaaggcaacgacgacctgactcagcagtgcatcgatttttatcagcaa
cattttgccaatcgtttttatttggaactgacccgtacaggccgcgttgacgaagagagc
tatctgcattttgcgctagaatgcgcacagcagagtaacttgcctgtcgtggcaaccaac
gaagtggtctttttaaacccagaacaattcgacgcccatgaaatacgtgtggcgatccac
gatggttttactctagaagatccgcgtcgtccaaaaaattacagtgctcagcagtatttg
cgcactgaagaagaaatgtgtgagctgttctcagacattcctgaagccttacaaaacagt
gttgaaattgctaaacgttgtaacgttaccgtacgtctaggggagtatttcttacctaac
ttcccaaccggtgatatgagcattgaagaattcttagtgcataagtctgaagaaggctta
gaagagcgcttagagtttttattccccgatcctaaagtgcgcgccgagcgtcgccctgaa
tatgatgagcgactgcaaatcgagctaggcgttgttaaccagatgggcttccccggttac
ttcctgatcgtaatggagttcatccagtggtcgaaagacaacgacattccagtaggccca
ggccgtggttcaggtgcgggttcattggtggcttatgcgctgaagatcactgaccttgat
ccattagaatacgatctgctattcgaacgattcttaaaccctgaacgtgtctccatgccc
gatttcgatatcgacttttgtatggataagcgcgatcaggttatcgatcacgtggctgag
ttgtatggtcgagatgcggtatcgcagatcatcaccttcggtactatggcagccaaagcg
gttattcgtgatgtaggccgagtgttaggtcacccatacggttttgttgatcgtatttcc
aaattagtgccacccgatccgggcatgacgctaagcaaagcatttgatgctgagccacaa
cttggcgagctctatgatgccgatgatgaggtcaaagatcttatcgatatgtgtcgcatc
ctagaagggtgtacacgtaacgcaggtaaacacgccggtggcgtggtgatctcacccacc
acaattacggacttttcaccgatctatgcggatgctgaagggcacttcccagttactcag
tttgataaaaatgacgtagaaaccgcaggtctggttaagtttgacttcttggggttacgt
actctaacgatcattgattgggcgctagggctaattaacccaaggcttgaaaaaatgggt
gaagagccggttcgcatcgaatcgattcctttgcaagatgaagcctcgttcagagtgcta
caaaactccgaaacgactgcggtattccagcttgaatctcgcggcatgaaggatttgatc
aagcgtcttaaaccggactgttttgaagacatcatcgcactggtggcgctatttcgtccc
ggcccattacaatcgggcatggtagataactttatcgaccgtaagcacggtcgagaagcc
atctcttaccctgatgaaacatggcaacatgattcattaaaagaaaccctagaaccgacc
tacggcatcattctgtatcaagaacaggttatgcaaatcgcccagattttggcgggctat
acgctcggcggcgcagatatgttgcgccgtgctatgggtaagaaaaaaccggaagagatg
gagaaacagcgctcagtctttaaagaaggggcagaaaataacggcgtagatggcgagttg
tcgatgaaaatcttcgacttggtagaaaaatttgccggctatggttttaacaaatcgcac
tcggcggcgtatgcattggtttcataccaaacgctatggctaaaaacccattatccagct
gaattcatggcggcggtaatgaccgcggatatggataatacggaaaaagtggtcggcttg
gtcgatgaatgtatccgtatggggctgaaaatcttaccgccggatgtaaactcgggtcta
tatcgctttaacgttgatgaaaccggcgcgattgtgtacggtattggcgcgattaaaggg
gtcggtgaaggcccaattgatagcatgatcgaggcgcgagccaaagacggccactttaaa
gatctgtttgatttttgtgcgcgtgttgatcttaaaaaatgcaacaagcgtgtgattgaa
aagcttattcaagcaggcgcactagatcgtctaggcccacaccgagcggctatgatggcc
tctgtagatgcagcggtaaaagcggcgggtcaataccaccaagcagaagcctttggacag
tcggatatgtttggcgtattaaccgatacccattccgatgttgagcaagcctatgcgcaa
gtgcctaaatggcctgaaaaagtgtggctagaaggggagcgagaaacgctcggcttatat
ttaactggccaccctattaacttgtatctacgcgagttggcaaaatacactagctgtcga
ttaaataacgccacaccaaccagacgtgaccaatctgttacgttagcaggtttagttatt
gcggctaaagtgatgaccaccaagcgcggaactcgcattggtattctgactttagacgac
cgttcggggcgaatggaagtgatgttattttctgatatgctagaaaagtatgcagaactt
gtagaaaaagatagaattgtagtggtttctggacaggtcagctttgatgatttcaatggt
ggccttaaaatgacggctcgtgaagtcatggatcttggccatgctcgtgagaaatacgct
tctggactcagtatctcgatatcagagtctcaaattgatgcacagttctttgaacgcttc
agtcgagtgttagagccgcatcgcgctggtactattccagtccatatttattatcaacgt
agcgacgcaagagccaagttatccttgggtgttgaatggcgagttacgccaagcgatacg
ttgattgacgatttaaagcagctacttgggaatgaccaggtagaactcgaatttaactga
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integrated database retrieval system
