Virgibacillus sp. SK37: X953_11545
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Entry
X953_11545 CDS
T03219
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
vir
Virgibacillus sp. SK37
Pathway
vir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X953_11545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vir03019
]
X953_11545
Messenger RNA biogenesis [BR:
vir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X953_11545
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
DUF3450
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AIF43690
UniProt:
A0A075JPW7
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Position
complement(2108082..2109647)
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AA seq
521 aa
AA seq
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MENPLIISILLALFLIVGIVVGYLIRKSIAEAKISSAETLAKQIVDEAHRNADAAKKEAL
LEAKDENHRLRQQTEEELRDRRNEVQKQENRLMQKEENLDRKSETLDKRELLLEKKEQSL
TEKQQQIEEMESKVEATLQEQQTELERISGYTTDQARQVILERIEKEVAHESALMIKEAE
NRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETL
TGIDLIIDDTPEAVILSGFDPIRRETARMALEKLVQDGRIHPARIEEMVDKARREVDEYI
REIGEETTFEVGVHGLHPDLIKILGRLKYRTSYGQNVLKHSTEVAYLAGLLAAELGEDVT
LARRAGLLHDIGKAIDHEVEGSHVEIGKELAMKYKEHEVVINSIASHHGDEEPTSIISVL
VAAADALSAARPGARSETLENYIKRLEKLEEISESFAGVEKSFAIQAGREIRIMVKPDEI
DDIESVRIARDIRKRIEGELDYPGHIKVTVIRETRSVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcctttaatcatctccattttgcttgctctattcctaatcgtcggtattgtt
gttggttatctgattcgtaaatctattgcggaagctaaaatttctagtgcagagacgttg
gctaaacaaatagttgatgaggcacaccggaatgcagatgccgctaaaaaagaggcactt
cttgaggcgaaggatgaaaatcacagacttcgtcagcagacagaagaggaattgcgtgat
cgtcgaaatgaagtacaaaagcaagaaaatcgtctgatgcaaaaagaagaaaatctggac
agaaaaagtgaaacactggacaagcgtgagctcttgttagagaagaaagaacaatcacta
acagaaaaacaacaacaaattgaagaaatggaaagcaaagtggaagctacattacaagag
cagcaaacggagcttgaacgcatttcaggatatacaactgaccaggctagacaagttatt
ttagagcggatcgaaaaagaagtagcgcatgaatcggctttaatgattaaagaagcagaa
aaccgagcgaaagaagaagctgataaaaaggccaagaacattctttctttggcactccag
cgttgtgctgcagatcatgtcgccgaaacaactgtttcagttgttaacttgccaaatgat
gaaatgaaaggtcgtattattggccgtgaaggccgaaatatacgaactttggaaacactg
acaggtattgatttgattatcgatgatacaccagaggcagtaattttatccggttttgat
cctattcgaagagaaacagctcgtatggctctagaaaaactagttcaagacggacgaatc
catcctgctcgcatcgaggagatggtagataaagcacgtcgggaagttgatgagtatata
cgggaaattggtgaagagacaactttcgaagtaggtgtacatggtttacatcccgatctg
ataaaaattctcggtcgtctaaaatatcgtactagctatggacaaaatgtcttgaagcat
tctacagaggttgcatatcttgccgggctgctcgctgctgaattaggtgaagatgttacc
ttggcaagaagagctggattactacatgacattggaaaagcaattgatcatgaagtggaa
ggtagtcacgtagaaatcggcaaagagcttgcaatgaagtataaagagcacgaggtagtt
attaattcaattgcttctcatcatggtgatgaggaacctacttccattatctctgtacta
gttgcagcagccgatgcattatccgcagcaagacctggtgcacgaagtgaaacgttagaa
aactatatcaaacgtctagagaaattggaagaaatttctgagtcatttgctggtgttgag
aaatcatttgcaattcaagcaggtagagaaatccgtattatggttaaacctgatgaaatt
gatgacattgagtctgttcgaattgcccgcgatatacgaaagcgaatcgaaggagagctt
gattatccaggtcatataaaagttactgttattcgggaaacgagatcagtagagtatgca
aaataa
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