Virgibacillus sp. SK37: X953_11820
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Entry
X953_11820 CDS
T03219
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K02405
RNA polymerase sigma factor FliA
Organism
vir
Virgibacillus sp. SK37
Pathway
vir02020
Two-component system
vir02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
X953_11820
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
X953_11820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vir03021
]
X953_11820
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vir02035
]
X953_11820
Transcription machinery [BR:
vir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
X953_11820
Bacterial motility proteins [BR:
vir02035
]
Flagellar system
Flagellar assembly proteins
Stator
X953_11820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
DUF3196
UPF0122
ATP-cone
HTH_37
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AIF43737
UniProt:
A0A075JQI3
LinkDB
All DBs
Position
complement(2162275..2163051)
Genome browser
AA seq
258 aa
AA seq
DB search
MTEYNLSHEQQLWDDWYKHKSNATANELIQHYTYLISFHVERISSHLPSNVSKDDIKSFA
TLGLYDALNKFEPDRDLKFDTYASFRIRGSIMDGLRKEDWLPRSLREKTKKIEQIAQELE
QSLYRKPTTEEIASKIGFTVKEVENVLRDSLFSNFLSMDENPKDMENDKERAGYSLSDDT
TITPENSLLFKELKEELATGMKTLNENEQLVISLFYNDELTLTEIGQVLGLTTSRISQIH
KRSILKLRSTLKKLHALG
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatataatttatctcatgaacaacaactgtgggatgactggtataaacataaa
tcaaatgcgaccgcaaacgaattaattcaacattatacgtatcttatcagtttccatgtt
gaacgaatctcaagtcatttaccaagcaatgtaagtaaggatgatattaaaagctttgca
acattggggttatacgatgctttaaacaaatttgagccagacagagatttaaaattcgat
acgtatgcctcttttcgaatacgtgggtccattatggatggattgaggaaagaagattgg
ttaccaagatccttaagagaaaaaacgaaaaagatagaacagatcgcccaggaactggaa
caatcactctatcgcaaacctactacggaagagattgcaagtaaaatcggtttcactgtt
aaagaggttgaaaatgttttaagggattccttattttcaaattttctttcgatggatgaa
aacccaaaggatatggagaatgataaggaaagagctggttattccctttcagatgatact
actattactcctgaaaacagcttgctctttaaggaattgaaggaagagcttgcgactgga
atgaagacacttaatgaaaatgaacaactggttataagtttgttttacaatgatgagcta
acactaacagaaattggtcaggtactaggattaacaacatccagaatttctcaaatacat
aagagatcaatcctaaaacttagaagtacattaaaaaagttgcatgcattgggttaa
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