Virgibacillus sp. SK37: X953_16055
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Entry
X953_16055 CDS
T03219
Name
(GenBank) DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
vir
Virgibacillus sp. SK37
Pathway
vir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
X953_16055
09124 Replication and repair
03420 Nucleotide excision repair
X953_16055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vir03021
]
X953_16055
03036 Chromosome and associated proteins [BR:
vir03036
]
X953_16055
03400 DNA repair and recombination proteins [BR:
vir03400
]
X953_16055
Enzymes [BR:
vir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
X953_16055
Transcription machinery [BR:
vir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
X953_16055
Chromosome and associated proteins [BR:
vir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
X953_16055
DNA repair and recombination proteins [BR:
vir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
X953_16055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AIF44489
UniProt:
A0A075JRI8
LinkDB
All DBs
Position
complement(3056860..3059157)
Genome browser
AA seq
765 aa
AA seq
DB search
MKQSIKIAARTLVEYVFRSGSIETGFRSSQPLVDGTKAHQKVQKTYGKNDQKEVYLKTEV
PFEEMLFQIDGRCDGLLKSDDGSLTIDEIKSTSGSLEVITEDSYPVHWAQATVYAYIYAK
DNDLEKINIQLTYIQVRTEEKKYFQRSLTREELADFVMDVIAQYAPYARLRIELKQKRDE
STKMLAFPFDSYRDGQRKLAGAVYKTIQEQKTLFAKASTGIGKTISTIFPSIKAIGEGHL
EKIFYLTAKTITRTAAEEAFRLLQEKGLAITVVTITAKDKICFQEQVNCDKAECPFANGY
YDRINGAILDILQNETLMTRSVIEQYARKHTVCPFEFSLDLAYAADAVICDYNYIFDPKV
SLQRLLDEQRKKSALLVDEAHNLVDRAREMYSATVEKETFLAIYRMYKDENEVIAKSANA
VNEYFLEKKKQNQQLEKELDEKLVHVVDAFAYAAEEELMRGGEAEELLLNGYFSAQAFVK
IARLYDKRFTSYMTLEGSDVQLKLFCLDPSHQLKQMGKGFRSKIFFSATLTPAGYYMDLL
GGKAEDYVVSIPSPFQRENAEVIIQPLSTRYRDREHTLEPMVQFIVDLLQQREGNFLVFF
PSYKYMLQVYEQFTATAPGEKVILQETGMTEERREDFLNSFQENEERLVGFAVLGGIFSE
GVDLKGDRLSGVIIVGVGLPQIGFERDIIKDHFQANGHNGYNYAYVYPGMNKVLQAGGRL
IRTDTDHGIIALIDDRFLQPMYQELLPYEWQHYSVGGAASGSFRG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagagcataaaaatagctgcgaggacgctagtggagtatgtttttcgcagtggc
agtatagaaactggtttccgcagttcgcaacctttggtggacggcactaaggcacaccag
aaagttcaaaagacgtacggtaaaaacgatcaaaaggaagtttatctaaaaaccgaagtc
ccttttgaagagatgttgtttcaaatagatggacgctgtgacggccttcttaaaagtgat
gatggatcactgaccattgatgaaattaaatcaacctccgggtcgctggaagttatcacg
gaggatagctatcctgttcactgggcccaagcaacggtctatgcctatatttatgcaaaa
gataatgatctggagaagataaatattcagctcacctacatacaagttcgtacagaggaa
aagaaatattttcagcgaagcttaacgcgtgaggaattggccgattttgtcatggatgtg
attgcccaatatgctccgtatgccagactccgcatagaactgaagcagaaacgggatgaa
agtacaaagatgctggcatttccgtttgatagctatagggacggacaacgcaagcttgcg
ggagctgtgtataaaacgattcaagaacagaagacactgtttgccaaagcatcgacggga
atcgggaagacaatctcaaccatttttccttctataaaggcgattggcgagggtcacttg
gaaaaaatcttttatctgacagcaaagacgattacccgaactgccgcagaagaagctttc
cgtctgttacaggaaaagggtctggcaattacggtcgttacaattacagctaaggataag
atttgttttcaggaacaggtaaattgtgacaaggcggaatgtccttttgccaatgggtat
tatgatcgaattaatggagcaatattggatattttgcagaacgagacattaatgacccga
tcggtgattgaacaatatgcacgcaagcataccgtctgtccgtttgagttttcattagat
ttggcatatgcagcagatgcagtgatttgcgattataattatatttttgatccaaaggtg
tccttgcagcgactgttggatgaacagaggaaaaagtctgcgttgctcgttgatgaggca
cataatcttgtcgatcgtgcgcgagagatgtattcggcaaccgtggagaaggaaacattt
cttgctatataccggatgtataaagatgaaaatgaagttatagccaaatcggcaaatgcc
gtaaatgagtattttttggaaaagaagaagcaaaatcaacagctggaaaaagaattggat
gaaaagcttgtacatgtcgtggatgccttcgcgtatgcggcagaagaagagctaatgcgt
ggcggggaagcggaggaattattgctgaatggctactttagtgcccaggcgtttgtgaaa
attgccagattgtatgataagcgttttaccagttatatgacgcttgagggtagtgatgtt
cagttaaagttgttttgcctggatccttcccatcagctaaagcaaatgggtaaaggattt
cgttccaagatcttcttctctgccacgctaacccctgcaggctactatatggacttgctt
ggtggaaaggcggaagattatgttgtatccatcccgtccccgtttcagcgtgaaaatgcg
gaagtgattatccagcctttatcaactaggtatcgtgacagggagcatacgttagagccg
atggtccaatttatcgttgatttattacagcagagggaagggaattttctcgtatttttc
ccatcctataaatatatgctgcaggtatatgagcagtttaccgcaacagcaccgggagaa
aaagtgatcttacaggaaacaggcatgacagaggaacggcgggaggactttttgaattcc
tttcaagaaaatgaggagcggctcgttgggtttgctgtattaggcgggattttttccgag
ggagtggatttgaaaggagatcgtttatcaggagtaataatcgtcggagtcggtctgccg
caaattggatttgaacgggatatcattaaggatcatttccaggccaatgggcacaacggt
tataactatgcgtatgtttatcctgggatgaataaagtactgcaagcaggcgggcggctc
attcgtacagatacagaccatggcatcatcgccctgatcgatgaccgcttccttcagccc
atgtaccaggagctgcttccatatgagtggcagcattattctgttggaggagcggcgtcg
ggttcttttcgggggtag
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integrated database retrieval system
