Virgibacillus sp. SK37: X953_17680
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Entry
X953_17680 CDS
T03219
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vir
Virgibacillus sp. SK37
Pathway
vir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X953_17680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vir03019
]
X953_17680
03400 DNA repair and recombination proteins [BR:
vir03400
]
X953_17680
Enzymes [BR:
vir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X953_17680
Messenger RNA biogenesis [BR:
vir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X953_17680
DNA repair and recombination proteins [BR:
vir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X953_17680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Sigma70_r4_2
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
AIF44729
UniProt:
A0A075JSA7
LinkDB
All DBs
Position
3418810..3420945
Genome browser
AA seq
711 aa
AA seq
DB search
MSTKEEKILQTYFGYETFRPGQMETINHILQMNNTLAVMPTGGGKSLCYQIPGLSLNGTA
IIISPLISLMKDQVDALQSLGISATYINSSLSSAEQQTRLQDISAGRYKFVYVAPERFDS
GYFINVVKRIKLSLVAFDEAHCISQWGHDFRPSYRSIVPNLQKLNNIPVFVALTATATEE
VISDIQQLLHINHVINTGFERENLSFHVVKGKDKATYVRSFIDEHKEESGIIYTATRKQA
DSLFDQLTRRGVNVAKYHAGLSEQERKEAQSAFIHDEKSIMVATNAFGMGIDKSNVRYVI
HYAMPMNIESYYQEAGRAGRDGEHSDCILLFSPQDTQLQKFLIEQSLMEEGAKQGEYRKL
QAMINYCHTHGCLTTFILDYFNDSVEKKACGRCSNCVERQEKSDITEEAQMILSCIKRMG
ERFGVGMTAKVLKGSKDKKIKDFRLDKISTYGILSAYTEKELTEWIHFLIAEHLISTEES
RFPTLKLNQNSVEVLKGKRQVWMFTTPLPIGEEADYQEDLFQKLRELRKRIADEKNVPPY
VLFSDATLKELSRYFPVTKEDMLAIKGVGEKKYEQFGEAFLSVIQVWRKDNPDVKEKIRI
GDTPKPREKKITDDRPSHMISYQSFQSGKSIKDIAVIRDMSKQTVEGHLFKAFHEGYPIA
WGIFFNDKEEAAVLKVWNEMDEPKLKPIKEALPEEYDYTKIKAVLVKNEIM
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgaaagaagaaaaaatactgcaaacatattttggctatgaaacgtttcgccct
ggccaaatggaaacaattaatcatattttacaaatgaataacacacttgccgttatgccc
acaggcggaggtaaatcactttgttatcaaatccccgggctatctttaaacggaactgca
attattatttctccattaatttccctaatgaaggatcaagtagatgctttacaatcccta
ggtatttcagctacttacataaatagttcactttcgtcagcagaacagcaaacaagatta
caagatatttctgcaggcagatataaatttgtgtatgtggccccagagcgttttgactcc
gggtactttattaatgtagtaaaacgaattaaattatcacttgtagcttttgacgaagcc
cactgtatctcccaatggggccatgacttcagaccaagctatcggtctattgttcctaac
ctgcaaaagctgaataatatcccggtttttgttgccttaactgctacagcaacagaggaa
gttatttctgatatacaacaattattgcatattaaccatgttataaatacgggttttgaa
agagagaatctgtcttttcatgtagtcaagggaaaagacaaagcaacctatgtacgttca
tttattgatgagcataaagaagagtccggtattatttatacagctactcgtaagcaagcg
gacagtttatttgaccaacttaccagacgaggagtaaatgtcgcaaaataccatgcgggt
ttatcagaacaggaacgaaaagaggctcaatctgcttttatccatgatgaaaagagtatt
atggttgcaacgaatgcatttggtatggggattgacaaatctaatgtgcgttatgtaatt
cactatgccatgccgatgaatatagaatcctactatcaggaagccggcagagcaggccgg
gatggtgaacatagtgactgtattcttctcttctctccacaggatacccaattacaaaaa
ttccttattgaacaatcattaatggaagagggagcaaaacaaggtgaataccgcaagcta
caggcaatgataaattattgccatacacatggatgcttaacaacctttattctcgattat
tttaatgattcggtagagaagaaagcttgcggacgttgcagtaactgtgttgaacgccaa
gaaaagagcgatataacagaagaagcacaaatgattctctcctgcatcaaacgtatggga
gagagatttggtgtaggtatgactgcaaaagtactaaaaggatcaaaggacaaaaaaata
aaagactttcgtttagataaaatatcgacctacggtattttatctgcatacacagaaaaa
gaacttacagaatggattcattttcttatagcagaacatttaatttctacggaagaaagt
agattcccaacattaaagctgaatcaaaactctgtagaagtattaaaaggaaaaagacag
gtttggatgttcacaactcctctccctattggagaagaggcggattatcaagaagatctt
tttcaaaaattacgggagctgcgtaagaggattgctgacgaaaaaaatgtccctccatat
gtactcttctctgacgctactttaaaagaattaagccgttatttccctgtaacgaaagag
gatatgcttgctattaaaggagtaggagagaaaaagtatgaacaattcggagaggctttt
ctatcggttatccaagtatggcggaaagacaaccctgatgtgaaagaaaaaataaggatt
ggggacacaccaaaaccaagagagaaaaaaatcacggacgacagaccaagtcatatgatt
agctaccagtcgttccaatccggaaaatccataaaggatattgccgtaattcgggatatg
tccaagcaaacagtagaaggacacttatttaaagcatttcacgaaggatatcccattgct
tgggggatcttctttaacgataaggaagaagctgctgtgttgaaggtttggaatgaaatg
gatgaaccaaaattaaagccgataaaagaagccttgcccgaagaatatgattatactaaa
ataaaggcagtgcttgtgaagaacgagataatgtaa
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