Vibrio sp. STUT-A16: VspSTUT16_00890
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Entry
VspSTUT16_00890 CDS
T10420
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vis03021
]
VspSTUT16_00890 (rpoH)
Transcription machinery [BR:
vis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VspSTUT16_00890 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_10
HTH_3
UCR_14kD
KORA
IF2_N
Motif
Other DBs
NCBI-ProteinID:
BDR16743
LinkDB
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Position
1:108142..108999
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AA seq
285 aa
AA seq
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MTKEAYPMALVTQDSLDSYIRSVNSYPMLTADEERELAERLHYKGEIEAAKGLILSHLRF
VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPSEVREMESRLAAVDS
TFDMPTDEDDSSNAYTAPMLYLEDKSSDVADNIEAANWEMHTNNRLGHALASLDERSQRI
VRSRWLDDEKATLQDLADEFGVSAERIRQLEKNAMKKLKLAVGEF
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagcgtatccgatggctctagtcacgcaagatagccttgatagctatatt
cgctcagtaaacagctacccaatgctgactgcagacgaagagcgtgagctggcagaacga
ttacactacaaaggtgagattgaggctgcaaaaggtctaattctttcgcacctacgattc
gttgttcacgttgctcgtggttactctggctacggtttgccaatggcggaccttgtgcaa
gagggtaacatcggtctaatgaaagccgttaagcgttttaacccagaagtaggggttcgc
ttggtgtcttttgctgtccactggatcaaagcagagatccacgaatacgtgctacgtaac
tggcgtatcgtgaaaattgcgaccactaaagcgcaacgtaagttgttcttcaatttgcgt
aagtcgaaaaagcgcttgggttggtttaacaacggtgaagtcgaaaccgttgcgcgtgag
ttaggtgttgagccttctgaagttcgcgagatggaatcacgcttagcggcggtggattca
acctttgatatgccaactgatgaagacgacagctcaaacgcttacacagcgccgatgctg
tacctagaagacaaatcgtctgatgtggctgacaacatcgaagctgcaaactgggaaatg
cacaccaacaaccgcttgggtcatgcattagcgagtttggatgagcgtagtcagcgcatc
gtgcgttctcgttggttagatgatgagaaagcaacattgcaagacttagctgatgagttc
ggtgtttctgccgagcgtattcgccagctagaaaaaaacgcaatgaagaaactaaaattg
gccgtgggtgaattttaa
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